Variant report

Variant	rs4072392
Chromosome Location	chr1:210757770-210757771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10779538	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs11119542	0.80[CEU][hapmap]
rs11588653	0.85[CEU][hapmap]
rs12567982	0.85[CEU][hapmap]
rs4282821	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873149	chr1:210749312-210793972	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4072392	NUCKS1	cis	parietal	SCAN
rs4072392	IL10	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210752200-210761200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:210754800-210758600	Enhancers	HSMMtube	muscle
3	chr1:210756000-210758200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:210756200-210758200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:210756200-210761000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:210756200-210771800	Weak transcription	Left Ventricle	heart
7	chr1:210756400-210760000	Weak transcription	Fetal Heart	heart
8	chr1:210756800-210757800	Weak transcription	Thymus	Thymus
9	chr1:210757200-210761200	Weak transcription	HSMM	muscle
10	chr1:210757400-210757800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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