Variant report

Variant	rs4072815
Chromosome Location	chr2:21141858-21141859
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12720854	1.00[MEX][hapmap]
rs13414987	0.98[ASN][1000 genomes]
rs4479392	0.90[ASN][1000 genomes]
rs4533439	0.83[ASN][1000 genomes]
rs6731905	0.90[ASN][1000 genomes]
rs6732027	0.90[ASN][1000 genomes]
rs72888845	0.94[ASN][1000 genomes]
rs7565511	0.90[ASN][1000 genomes]
rs7580543	0.91[ASN][1000 genomes]
rs7586740	0.91[ASN][1000 genomes]
rs7588415	0.90[ASN][1000 genomes]
rs7594084	0.91[ASN][1000 genomes]
rs7596102	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455852	chr2:21125742-21143329	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv581169	chr2:21125742-21143329	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21133400-21149400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:21141400-21142200	Weak transcription	Ovary	ovary
3	chr2:21141600-21142600	Weak transcription	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links