Variant report

Variant	rs4076846
Chromosome Location	chr6:133374514-133374515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11963825	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11965251	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965334	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11968671	0.81[ASN][1000 genomes]
rs34704641	0.81[ASN][1000 genomes]
rs4458711	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4569980	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5010276	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5020765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56026451	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56235131	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57161904	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57261444	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57940911	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58175086	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58190426	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58336680	1.00[ASN][1000 genomes]
rs58519358	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59430285	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60000557	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60082145	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60484160	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60576607	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60622734	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60804293	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61006452	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61244591	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61362264	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61555922	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73553617	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73773507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73773508	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73773509	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73773520	0.95[ASN][1000 genomes]
rs73773521	0.95[ASN][1000 genomes]
rs73773523	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7747170	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9493506	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv5481	chr6:133311665-133374548	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3445931	chr6:133347824-133434532	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv519475	chr6:133350936-133474673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133361200-133376200	Weak transcription	Psoas Muscle	Psoas
2	chr6:133361800-133376000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:133368600-133376200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:133371400-133375800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:133371400-133376000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:133371400-133376000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:133371400-133376000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:133371400-133376200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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