Variant report

Variant	rs4077768
Chromosome Location	chr6:133377511-133377512
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10457002	0.92[EUR][1000 genomes]
rs10457602	0.91[CEU][hapmap]
rs10457603	0.91[CEU][hapmap]
rs12192002	0.87[EUR][1000 genomes]
rs12192605	0.87[EUR][1000 genomes]
rs12193118	0.88[EUR][1000 genomes]
rs12198619	0.81[EUR][1000 genomes]
rs12199972	0.81[EUR][1000 genomes]
rs12200155	0.96[ASN][1000 genomes]
rs12201315	0.91[CEU][hapmap]
rs12205139	0.85[EUR][1000 genomes]
rs12212715	0.85[EUR][1000 genomes]
rs28538690	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4077767	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4257872	0.82[EUR][1000 genomes]
rs4273707	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4273708	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4285336	0.91[AFR][1000 genomes]
rs4571580	0.85[AFR][1000 genomes]
rs4895952	0.81[EUR][1000 genomes]
rs57161827	0.85[EUR][1000 genomes]
rs58835706	0.85[EUR][1000 genomes]
rs62430562	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62430581	0.81[EUR][1000 genomes]
rs62430582	0.85[EUR][1000 genomes]
rs62430588	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62430590	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6569863	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs6569865	0.91[AFR][1000 genomes]
rs6902347	0.81[EUR][1000 genomes]
rs6911954	0.92[EUR][1000 genomes]
rs6927627	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6933214	0.82[EUR][1000 genomes]
rs6935070	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6935480	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6936410	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6937029	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6939899	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6940959	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72557636	0.81[EUR][1000 genomes]
rs7738156	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7738592	0.86[EUR][1000 genomes]
rs7740210	0.85[AFR][1000 genomes]
rs7740263	0.89[AFR][1000 genomes]
rs7750279	0.91[CEU][hapmap]
rs7750376	0.95[CEU][hapmap]
rs7754486	0.90[CEU][hapmap]
rs7756171	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7761372	0.87[EUR][1000 genomes]
rs9321388	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321389	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483524	0.89[AFR][1000 genomes]
rs9483529	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9483530	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9483535	0.93[EUR][1000 genomes]
rs9493513	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9493514	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9493515	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9493517	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9493518	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs975225	0.81[CEU][hapmap];0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3445931	chr6:133347824-133434532	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv519475	chr6:133350936-133474673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133376000-133378000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:133376000-133378000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:133376000-133378400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:133376800-133377800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:133376800-133383200	Weak transcription	Fetal Lung	lung
6	chr6:133377000-133377800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:133377000-133383400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:133377200-133378200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:133377200-133378200	Weak transcription	Right Atrium	heart
10	chr6:133377200-133384000	Weak transcription	Left Ventricle	heart
11	chr6:133377200-133384000	Weak transcription	Psoas Muscle	Psoas
12	chr6:133377400-133377800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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