Variant report

Variant	rs4082688
Chromosome Location	chr15:76582617-76582618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr15:76582297-76582643	HepG2	liver:	n/a	n/a
2	FOXA1	chr15:76582389-76582703	HepG2	liver:	n/a	n/a
3	FOXA2	chr15:76582410-76582631	HepG2	liver:	n/a	n/a
4	ZNF384	chr15:76582475-76582841	K562	blood:	n/a	n/a
5	FOXA1	chr15:76582358-76582636	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:76572935..76575613-chr15:76581006..76583216,3	K562	blood:
2	chr15:76577914..76580283-chr15:76582309..76584434,2	K562	blood:
3	chr15:76573019..76575613-chr15:76581006..76583116,2	K562	blood:

Variant related genes	Relation type
ETFA	TF binding region
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs57026560	1.00[AFR][1000 genomes]
rs57931886	1.00[AFR][1000 genomes]
rs58060544	0.87[AFR][1000 genomes]
rs58388611	0.87[AFR][1000 genomes]
rs60794367	1.00[AFR][1000 genomes]
rs7170187	1.00[AFR][1000 genomes]
rs7174377	1.00[AFR][1000 genomes]
rs7175175	1.00[AFR][1000 genomes]
rs73442144	0.87[AFR][1000 genomes]
rs73442152	0.87[AFR][1000 genomes]
rs73442155	0.87[AFR][1000 genomes]
rs73442176	0.87[AFR][1000 genomes]
rs73442185	0.87[AFR][1000 genomes]
rs73442188	0.87[AFR][1000 genomes]
rs73444261	0.87[AFR][1000 genomes]
rs73444264	0.87[AFR][1000 genomes]
rs73444270	1.00[AFR][1000 genomes]
rs73444271	1.00[AFR][1000 genomes]
rs73444275	1.00[AFR][1000 genomes]
rs73444284	0.87[AFR][1000 genomes]
rs73444286	0.87[AFR][1000 genomes]
rs73444294	0.87[AFR][1000 genomes]
rs73444302	0.87[AFR][1000 genomes]
rs73448115	1.00[AFR][1000 genomes]
rs73450219	1.00[AFR][1000 genomes]
rs73450231	1.00[AFR][1000 genomes]
rs73450235	0.87[AFR][1000 genomes]
rs73450238	0.87[AFR][1000 genomes]
rs73450253	1.00[AFR][1000 genomes]
rs8037656	1.00[YRI][hapmap]
rs8039673	0.87[AFR][1000 genomes]
rs8043089	1.00[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76555800-76586000	Weak transcription	Stomach Mucosa	stomach
2	chr15:76556800-76594600	Weak transcription	Esophagus	oesophagus
3	chr15:76557000-76582800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:76558000-76603000	Weak transcription	Aorta	Aorta
5	chr15:76561000-76587600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:76562000-76591600	Weak transcription	Small Intestine	intestine
7	chr15:76562600-76586000	Weak transcription	Brain Angular Gyrus	brain
8	chr15:76563000-76586400	Weak transcription	Fetal Heart	heart
9	chr15:76563200-76590800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:76569000-76585200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:76569000-76586400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:76569400-76583600	Strong transcription	Hela-S3	cervix
13	chr15:76569400-76585000	Strong transcription	Fetal Intestine Large	intestine
14	chr15:76569800-76591600	Weak transcription	Spleen	Spleen
15	chr15:76571200-76586400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:76572600-76585800	Weak transcription	Brain Anterior Caudate	brain
17	chr15:76573200-76592200	Weak transcription	Fetal Kidney	kidney
18	chr15:76573200-76593200	Weak transcription	Right Ventricle	heart
19	chr15:76574600-76585200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:76574800-76590600	Weak transcription	Ovary	ovary
21	chr15:76574800-76591600	Weak transcription	Gastric	stomach
22	chr15:76574800-76591600	Weak transcription	Lung	lung
23	chr15:76574800-76601400	Weak transcription	Pancreas	Pancrea
24	chr15:76574800-76602000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:76575000-76586000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr15:76575800-76585200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr15:76575800-76585200	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr15:76576000-76585200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr15:76576000-76585600	Weak transcription	HUVEC	blood vessel
30	chr15:76576000-76585800	Weak transcription	Brain Hippocampus Middle	brain
31	chr15:76576200-76602800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:76576400-76586200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr15:76576600-76585800	Weak transcription	NH-A	brain
34	chr15:76577400-76585400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:76579000-76586000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr15:76579200-76583000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr15:76579200-76584400	Weak transcription	A549	lung
38	chr15:76579200-76585600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:76579200-76586000	Weak transcription	Brain Substantia Nigra	brain
40	chr15:76579200-76586200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr15:76579200-76591600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:76579200-76602000	Weak transcription	Thymus	Thymus
43	chr15:76579400-76582800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:76579400-76583000	Weak transcription	Primary T cells from cord blood	blood
45	chr15:76579400-76585600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:76579400-76585800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr15:76579400-76586200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr15:76579400-76587200	Weak transcription	NHLF	lung
49	chr15:76579400-76591000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr15:76579400-76592600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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