Variant report

Variant	rs4083482
Chromosome Location	chr11:35351639-35351640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35351151..35353961-chr11:35376008..35377580,2	MCF-7	breast:
2	chr11:35345567..35348254-chr11:35351098..35354051,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11033067	0.92[ASN][1000 genomes]
rs11033072	0.98[ASN][1000 genomes]
rs11033077	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11033092	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12269851	1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[ASN][1000 genomes]
rs12274991	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12276318	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12276739	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12281268	0.94[ASN][1000 genomes]
rs12285197	0.91[ASN][1000 genomes]
rs12292906	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16927393	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56205617	0.96[EUR][1000 genomes]
rs7123447	0.81[ASN][1000 genomes]
rs7124363	1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs7124645	1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs7926298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Plasma omega-6 polyunsaturated fatty acid levels (adrenic acid)	24823311	GWAS catalog

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35339000-35358000	Weak transcription	HepG2	liver
2	chr11:35344200-35352600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:35344400-35352000	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:35344400-35352600	Weak transcription	Gastric	stomach
5	chr11:35344400-35353200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:35347000-35356000	Weak transcription	NHLF	lung
7	chr11:35347800-35356000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:35348400-35352400	Weak transcription	Brain Anterior Caudate	brain
9	chr11:35348400-35356000	Weak transcription	NHDF-Ad	bronchial
10	chr11:35348400-35356600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr11:35348400-35358000	Weak transcription	Hela-S3	cervix
12	chr11:35348600-35352000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:35349000-35352200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:35349200-35351800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:35349200-35354200	Enhancers	Primary T cells from cord blood	blood
16	chr11:35349200-35354600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:35349200-35354800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr11:35349200-35357000	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr11:35349800-35352800	Enhancers	Stomach Smooth Muscle	stomach
20	chr11:35350200-35352800	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr11:35350400-35358200	Weak transcription	Placenta	Placenta
22	chr11:35350600-35352200	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:35350600-35353800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:35350600-35354800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr11:35350800-35356200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr11:35351200-35352800	Enhancers	Left Ventricle	heart
27	chr11:35351200-35353000	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr11:35351200-35354000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:35351200-35354000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:35351200-35354000	Enhancers	Pancreas	Pancrea
31	chr11:35351200-35354400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr11:35351200-35354600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr11:35351200-35354600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr11:35351400-35352000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
35	chr11:35351400-35352000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
36	chr11:35351400-35352400	Enhancers	GM12878-XiMat	blood
37	chr11:35351400-35352600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:35351400-35352600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:35351400-35353000	Enhancers	Brain Cingulate Gyrus	brain
40	chr11:35351400-35354400	Enhancers	Brain Angular Gyrus	brain
41	chr11:35351400-35357200	Enhancers	Primary B cells from peripheral blood	blood
42	chr11:35351600-35351800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
43	chr11:35351600-35352200	Enhancers	Fetal Brain Male	brain
44	chr11:35351600-35352800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:35351600-35353000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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