Variant report

Variant	rs409354
Chromosome Location	chr11:16876618-16876619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16869700..16872673-chr11:16876398..16878604,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10766360	0.84[CHD][hapmap]
rs12418111	1.00[CHB][hapmap]
rs1638456	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1638457	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16933675	1.00[CHB][hapmap];0.96[CHD][hapmap];0.81[TSI][hapmap]
rs16933680	0.86[CHB][hapmap]
rs16933682	0.86[CHB][hapmap]
rs16933684	0.84[CHD][hapmap]
rs177563	0.83[CHD][hapmap]
rs2057788	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs369457	1.00[CEU][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs370053	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs370671	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs371905	1.00[CEU][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs373266	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs376641	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs378863	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs379051	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs380655	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs381815	0.88[CHB][hapmap]
rs382280	0.90[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs385627	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs385943	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs387849	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs388968	0.86[CHB][hapmap]
rs389967	1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs390974	1.00[CEU][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs391332	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs392706	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs393633	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs397343	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs397373	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs398216	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs400085	1.00[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs400349	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs400458	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs401820	1.00[CEU][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs402982	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs404492	0.91[AMR][1000 genomes]
rs406109	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs406890	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs406937	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs407354	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs407932	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs414219	1.00[CHB][hapmap];0.96[CHD][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs414992	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs415265	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs417349	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs417406	1.00[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs418034	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs420975	1.00[CEU][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes]
rs425325	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs425745	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs426085	0.98[AMR][1000 genomes]
rs427429	0.82[AMR][1000 genomes]
rs428840	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs428933	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs429368	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs430211	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs431208	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs432046	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs432656	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs433212	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs433225	1.00[CEU][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs434761	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs434899	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs435206	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs439224	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs440212	1.00[CEU][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs443327	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs445146	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs445205	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs445431	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs446518	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs446612	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs448671	0.88[CHB][hapmap];0.92[CHD][hapmap]
rs450828	1.00[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs452414	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs452745	1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs453015	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs454538	0.98[AMR][1000 genomes]
rs454869	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4756875	0.84[CHD][hapmap]
rs4756876	0.84[CHD][hapmap]
rs4757449	0.84[CHD][hapmap]
rs4757454	0.84[CHD][hapmap]
rs4757456	0.84[CHD][hapmap]
rs4757457	0.84[CHD][hapmap]
rs58555284	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7926335	0.88[CHB][hapmap]
rs7951328	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16839200-16878800	Weak transcription	Thymus	Thymus
2	chr11:16848400-16878600	Weak transcription	Small Intestine	intestine
3	chr11:16853400-16883800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:16855200-16877600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:16855200-16878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:16858000-16876800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:16858200-16878800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:16861200-16879800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr11:16861800-16877000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:16861800-16880600	Weak transcription	HMEC	breast
11	chr11:16862200-16876800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:16863400-16882000	Weak transcription	Stomach Mucosa	stomach
13	chr11:16863800-16884800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:16863800-16892600	Weak transcription	Fetal Kidney	kidney
15	chr11:16864000-16878800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:16864200-16882000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:16866800-16879000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:16867600-16879200	Strong transcription	Liver	Liver
19	chr11:16867800-16885000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:16870400-16878000	Strong transcription	Fetal Intestine Large	intestine
21	chr11:16870800-16879000	Strong transcription	HepG2	liver
22	chr11:16871200-16878000	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr11:16871400-16878800	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr11:16871400-16879000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:16871400-16879000	Strong transcription	Duodenum Mucosa	Duodenum
26	chr11:16871600-16876800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:16871600-16877000	Strong transcription	A549	lung
28	chr11:16872000-16877400	Weak transcription	HSMM	muscle
29	chr11:16872000-16877800	Weak transcription	Brain Hippocampus Middle	brain
30	chr11:16872000-16895800	Weak transcription	Aorta	Aorta
31	chr11:16872200-16877600	Weak transcription	Lung	lung
32	chr11:16872200-16882200	Weak transcription	Brain Angular Gyrus	brain
33	chr11:16872200-16884400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr11:16872600-16889600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:16872800-16883800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:16873000-16881200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:16874000-16876800	Weak transcription	Brain Substantia Nigra	brain
38	chr11:16874400-16881400	Strong transcription	Fetal Intestine Small	intestine
39	chr11:16874800-16876800	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr11:16875000-16877600	Strong transcription	Placenta	Placenta
41	chr11:16875000-16877600	Enhancers	Right Atrium	heart
42	chr11:16875000-16877800	Strong transcription	Stomach Smooth Muscle	stomach
43	chr11:16875000-16878400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:16875000-16878400	Strong transcription	Pancreas	Pancrea
45	chr11:16875000-16879000	Enhancers	Left Ventricle	heart
46	chr11:16875200-16879000	Strong transcription	Gastric	stomach
47	chr11:16875400-16877600	Strong transcription	Ovary	ovary
48	chr11:16875400-16879200	Strong transcription	Esophagus	oesophagus
49	chr11:16875600-16877600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:16875600-16877800	Strong transcription	Fetal Stomach	stomach

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