Variant report

Variant	rs409492
Chromosome Location	chr14:56527105-56527106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10131576	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1209097	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1212644	0.82[EUR][1000 genomes]
rs12880990	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1307324	0.82[EUR][1000 genomes]
rs1613831	0.85[EUR][1000 genomes]
rs1679764	0.82[EUR][1000 genomes]
rs2622324	0.85[EUR][1000 genomes]
rs2763574	0.85[EUR][1000 genomes]
rs2928875	0.84[EUR][1000 genomes]
rs374338	0.81[JPT][hapmap]
rs377072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs377471	0.91[JPT][hapmap]
rs387419	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs430315	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs409492	ERO1L	cis	parietal	SCAN
rs409492	C14orf166	cis	cerebellum	SCAN
rs409492	FBXO34	cis	cerebellum	SCAN
rs409492	PELI2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56525600-56527200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:56527000-56529400	Weak transcription	Fetal Intestine Small	intestine
3	chr14:56527000-56529600	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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