Variant report
| Variant | rs41034 |
|---|---|
| Chromosome Location | chr7:104144679-104144680 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:104142316..104144690-chr7:104144743..104146958,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs12705235 | 1.00[EUR][1000 genomes] |
| rs17137377 | 1.00[MEX][hapmap] |
| rs17137382 | 1.00[MEX][hapmap] |
| rs17137405 | 1.00[MEX][hapmap] |
| rs2193213 | 1.00[EUR][1000 genomes] |
| rs2216245 | 1.00[EUR][1000 genomes] |
| rs41057 | 1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs4727607 | 1.00[EUR][1000 genomes] |
| rs6954910 | 1.00[MEX][hapmap] |
| rs967919 | 1.00[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888925 | chr7:104047599-104170560 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | esv1802646 | chr7:104143090-104144905 | Inactive region | Chromatin interactive region | n/a | n/a | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
