Variant report
| Variant | rs410723 |
|---|---|
| Chromosome Location | chr5:151491976-151491977 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:151491359..151493092-chr5:151503050..151505750,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs154106 | 0.86[ASN][1000 genomes] |
| rs294947 | 0.83[EUR][1000 genomes] |
| rs294955 | 0.82[EUR][1000 genomes] |
| rs29822 | 0.96[ASN][1000 genomes] |
| rs29823 | 0.96[ASN][1000 genomes] |
| rs29825 | 0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs29827 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs29835 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs29838 | 0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs39802 | 0.96[ASN][1000 genomes] |
| rs39803 | 0.96[ASN][1000 genomes] |
| rs40812 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020899 | chr5:151412785-151516788 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2760935 | chr5:151463117-151586051 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv883039 | chr5:151471642-151540888 | Enhancers Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv883040 | chr5:151471642-151596273 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv5072 | chr5:151490271-151530419 | Enhancers Weak transcription Active TSS Bivalent Enhancer | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:151488400-151492600 | Weak transcription | Primary T helper 17 cells PMA-I stimulated | -- |
