Variant report

Variant	rs4110478
Chromosome Location	chr11:35341017-35341018
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35339447..35341142-chr11:35384783..35386762,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11033078	0.90[EUR][1000 genomes]
rs11033085	0.85[EUR][1000 genomes]
rs11033088	0.88[EUR][1000 genomes]
rs12274790	0.88[EUR][1000 genomes]
rs12279038	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2273686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847618	0.90[EUR][1000 genomes]
rs3915513	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4996048	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7111949	0.88[EUR][1000 genomes]
rs7114489	0.88[EUR][1000 genomes]
rs7127728	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35324400-35343200	Weak transcription	Gastric	stomach
2	chr11:35327000-35343400	Weak transcription	Fetal Lung	lung
3	chr11:35332000-35343800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:35335600-35341800	Weak transcription	Brain Anterior Caudate	brain
5	chr11:35335600-35342800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:35335600-35343200	Weak transcription	Left Ventricle	heart
7	chr11:35335600-35343200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:35337800-35341400	Enhancers	GM12878-XiMat	blood
9	chr11:35338000-35341400	Enhancers	Primary B cells from peripheral blood	blood
10	chr11:35338000-35342400	Weak transcription	HSMM	muscle
11	chr11:35338000-35343000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:35338200-35343400	Weak transcription	Osteobl	bone
13	chr11:35338600-35343200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:35338800-35341400	Enhancers	Primary B cells from cord blood	blood
15	chr11:35339000-35341800	Weak transcription	Brain Germinal Matrix	brain
16	chr11:35339000-35343400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:35339000-35358000	Weak transcription	HepG2	liver
18	chr11:35339200-35344200	Weak transcription	Psoas Muscle	Psoas
19	chr11:35339600-35341400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr11:35339800-35341400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr11:35339800-35342000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:35340000-35341200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr11:35340000-35341200	Enhancers	Aorta	Aorta
24	chr11:35340000-35341400	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr11:35340000-35341400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr11:35340000-35341400	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr11:35340000-35341600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:35340000-35342200	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr11:35340200-35341400	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr11:35340400-35341200	Enhancers	Stomach Smooth Muscle	stomach
31	chr11:35340400-35341400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:35340400-35342000	Enhancers	Primary T cells from cord blood	blood
33	chr11:35340400-35348400	Enhancers	NHDF-Ad	bronchial
34	chr11:35340600-35341200	Enhancers	Right Atrium	heart
35	chr11:35340600-35341200	Enhancers	NH-A	brain
36	chr11:35340600-35341400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:35340600-35341400	Enhancers	Primary T cells fromperipheralblood	blood
38	chr11:35340600-35341400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr11:35340600-35341600	Enhancers	Brain Angular Gyrus	brain
40	chr11:35340600-35342400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:35340600-35342400	Enhancers	Brain Substantia Nigra	brain
42	chr11:35340600-35344800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr11:35340600-35345800	Enhancers	Pancreas	Pancrea
44	chr11:35340600-35347600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:35340800-35341200	Enhancers	Primary hematopoietic stem cells	blood
46	chr11:35340800-35341200	Enhancers	Brain Cingulate Gyrus	brain
47	chr11:35340800-35341200	Enhancers	Fetal Brain Male	brain
48	chr11:35340800-35341200	Enhancers	NHLF	lung
49	chr11:35340800-35341400	Enhancers	Fetal Brain Female	brain
50	chr11:35340800-35342200	Enhancers	HSMMtube	muscle

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