Variant report

Variant	rs411990
Chromosome Location	chr5:80996136-80996137
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:80996121..80997838-chr5:81001876..81003774,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12186581	0.80[ASN][1000 genomes]
rs13156146	0.84[ASN][1000 genomes]
rs13160079	0.84[ASN][1000 genomes]
rs1347597	0.90[ASN][1000 genomes]
rs34007998	0.84[ASN][1000 genomes]
rs365241	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs371705	0.84[ASN][1000 genomes]
rs374479	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs382523	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs389860	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs398666	0.84[ASN][1000 genomes]
rs402061	0.84[ASN][1000 genomes]
rs402352	0.98[ASN][1000 genomes]
rs403777	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs403795	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs406283	0.84[ASN][1000 genomes]
rs411520	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs418033	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs419435	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs420202	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs420412	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs421348	0.98[ASN][1000 genomes]
rs422523	0.84[ASN][1000 genomes]
rs424762	0.84[ASN][1000 genomes]
rs424844	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs425897	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs432617	0.98[ASN][1000 genomes]
rs437417	0.98[ASN][1000 genomes]
rs446064	0.98[ASN][1000 genomes]
rs452314	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs586695	0.84[ASN][1000 genomes]
rs827065	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882233	chr5:80849084-81049187	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv882235	chr5:80909132-81006061	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830361	chr5:80909811-81080409	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882236	chr5:80930992-80999768	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882237	chr5:80938489-81006061	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3345018	chr5:80972245-80998709	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3330268	chr5:80972245-81001669	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv830362	chr5:80990787-81184249	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80983800-81011600	Weak transcription	Left Ventricle	heart
2	chr5:80984000-81011600	Weak transcription	Lung	lung
3	chr5:80984200-81032000	Weak transcription	Esophagus	oesophagus
4	chr5:80984400-81015000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:80985600-80996200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr5:80990800-80999200	Weak transcription	Ovary	ovary
7	chr5:80992800-80996600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr5:80994400-80996800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:80994600-80996400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:80994800-80996800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr5:80994800-80997200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:80994800-80997600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:80995000-80997200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:80995000-80997400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:80995000-80997800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr5:80995000-81005800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr5:80995200-80998200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr5:80995400-80996200	Strong transcription	Thymus	Thymus
19	chr5:80995400-80997200	ZNF genes & repeats	Primary B cells from cord blood	blood
20	chr5:80995400-80997200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:80995400-80997200	ZNF genes & repeats	Fetal Muscle Leg	muscle
22	chr5:80995600-80996800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr5:80995600-80997600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
24	chr5:80995600-80997600	Strong transcription	Fetal Thymus	thymus
25	chr5:80995800-80996400	ZNF genes & repeats	Aorta	Aorta
26	chr5:80995800-80996800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:80995800-80996800	ZNF genes & repeats	Fetal Lung	lung
28	chr5:80995800-80996800	ZNF genes & repeats	Psoas Muscle	Psoas
29	chr5:80995800-80997000	ZNF genes & repeats	Fetal Brain Female	brain
30	chr5:80995800-80997800	ZNF genes & repeats	Primary T cells from cord blood	blood
31	chr5:80996000-80996200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
32	chr5:80996000-80996400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
33	chr5:80996000-80996600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
34	chr5:80996000-80996600	ZNF genes & repeats	Fetal Kidney	kidney
35	chr5:80996000-80996800	ZNF genes & repeats	Fetal Heart	heart
36	chr5:80996000-80997600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr5:80996000-80998800	ZNF genes & repeats	Dnd41	blood
38	chr5:80996000-81014000	Weak transcription	Fetal Stomach	stomach

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