Variant report

Variant	rs41266134
Chromosome Location	chr1:152192555-152192556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10788828	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10888468	0.82[AMR][1000 genomes]
rs10888470	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10888471	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11204937	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11204938	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11204939	0.81[AMR][1000 genomes]
rs11204944	0.88[AMR][1000 genomes]
rs11204947	0.85[AMR][1000 genomes]
rs11204948	0.88[AMR][1000 genomes]
rs11204949	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11589532	0.87[AMR][1000 genomes]
rs11589587	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11590365	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12405678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12408581	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12409762	0.85[AMR][1000 genomes]
rs12567463	0.82[AMR][1000 genomes]
rs12748016	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1390485	0.89[AMR][1000 genomes]
rs1390487	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1390488	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2291770	0.82[AMR][1000 genomes]
rs36033453	0.85[AMR][1000 genomes]
rs4326625	0.83[AMR][1000 genomes]
rs4415568	0.82[AMR][1000 genomes]
rs4421596	0.82[AMR][1000 genomes]
rs4511111	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4582793	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4845426	0.83[AMR][1000 genomes]
rs4845740	0.82[AMR][1000 genomes]
rs4845741	0.82[AMR][1000 genomes]
rs4845742	0.82[AMR][1000 genomes]
rs4845744	0.82[AMR][1000 genomes]
rs4845745	0.82[AMR][1000 genomes]
rs4845750	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs55957623	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55982921	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56013982	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6587647	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6587651	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6587652	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6662450	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6666382	0.85[AMR][1000 genomes]
rs6668499	0.81[EUR][1000 genomes]
rs6676012	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72696952	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72696963	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72696969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74127901	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7520249	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7534716	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7535536	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7550106	0.82[AMR][1000 genomes]
rs868303	0.82[AMR][1000 genomes]
rs868304	0.82[AMR][1000 genomes]
rs877776	0.82[AMR][1000 genomes]
rs991231	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv471347	chr1:152184558-152196669	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv8391	chr1:152185328-152194083	ZNF genes & repeats Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases
8	nsv824598	chr1:152185654-152193520	Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	nsv824609	chr1:152185665-152193520	Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv824620	chr1:152185672-152193520	Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	esv1792227	chr1:152185731-152193368	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv1797676	chr1:152185731-152193368	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv1821751	chr1:152185731-152193368	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv1828930	chr1:152185731-152193368	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
15	esv1829215	chr1:152185731-152193368	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
16	esv19713	chr1:152185869-152196724	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv1794879	chr1:152185890-152193168	Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv1796906	chr1:152185890-152193168	Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
19	esv1828100	chr1:152185890-152193168	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
20	esv1830019	chr1:152185890-152193168	Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
21	esv1800231	chr1:152185890-152196175	ZNF genes & repeats Active TSS Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
22	esv20602	chr1:152185909-152193469	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
23	esv3377292	chr1:152188428-152192926	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
24	nsv824631	chr1:152191386-152193520	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
25	nsv824642	chr1:152191684-152193520	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs41266134	FLG	cis	Thyroid	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152191400-152193600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:152191600-152197200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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