The 2.0 version of rSNPBase

Variant report

Variant rs41279543
Chromosome Location chr4:56846567-56846568
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:56815800-56875000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr4:56816200-56846600 Weak transcription Right Ventricle heart
3 chr4:56816200-56873400 Weak transcription Pancreas Pancrea
4 chr4:56816200-56884200 Weak transcription Rectal Smooth Muscle rectum
5 chr4:56816200-56887800 Weak transcription Gastric stomach
6 chr4:56816400-56866000 Weak transcription Spleen Spleen
7 chr4:56816400-56890800 Weak transcription Colon Smooth Muscle Colon
8 chr4:56816600-56851800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr4:56816600-56852000 Weak transcription Skeletal Muscle Female skeletal muscle
10 chr4:56816600-56865800 Weak transcription Placenta Amnion Placenta Amnion
11 chr4:56816600-56890600 Weak transcription Brain Hippocampus Middle brain
12 chr4:56816600-56896400 Weak transcription Fetal Heart heart
13 chr4:56816800-56865800 Weak transcription Small Intestine intestine
14 chr4:56816800-56869800 Weak transcription HepG2 liver
15 chr4:56817400-56885400 Weak transcription NHDF-Ad bronchial
16 chr4:56817800-56854600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr4:56818200-56853800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr4:56819000-56897400 Weak transcription HSMMtube muscle
19 chr4:56819200-56859600 Weak transcription Fetal Kidney kidney
20 chr4:56819200-56890600 Weak transcription NHLF lung
21 chr4:56820600-56892400 Weak transcription Hela-S3 cervix
22 chr4:56822200-56849800 Weak transcription Fetal Brain Male brain
23 chr4:56822200-56873600 Weak transcription Primary T killer naive cells fromperipheralblood blood
24 chr4:56822400-56865800 Weak transcription Psoas Muscle Psoas
25 chr4:56823600-56893800 Weak transcription HMEC breast
26 chr4:56824000-56846600 Weak transcription Stomach Smooth Muscle stomach
27 chr4:56824600-56846800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
28 chr4:56824600-56846800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr4:56825200-56851600 Weak transcription Lung lung
30 chr4:56825200-56865800 Weak transcription Aorta Aorta
31 chr4:56825600-56870000 Weak transcription Primary T helper naive cells from peripheral blood blood
32 chr4:56826800-56849400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
33 chr4:56827800-56854200 Strong transcription Primary monocytes fromperipheralblood blood
34 chr4:56828200-56854600 Strong transcription Monocytes-CD14+_RO01746 blood
35 chr4:56828200-56884200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr4:56828600-56851800 Weak transcription Fetal Intestine Small intestine
37 chr4:56828800-56852000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr4:56829200-56881400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr4:56829400-56865600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr4:56829600-56890600 Weak transcription A549 lung
41 chr4:56831800-56855200 Strong transcription Primary T cells from cord blood blood
42 chr4:56832200-56846800 Weak transcription Rectal Mucosa Donor 29 rectum
43 chr4:56832400-56848400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr4:56832400-56865800 Weak transcription Liver Liver
45 chr4:56832600-56854800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr4:56833000-56877200 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr4:56835400-56847000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
48 chr4:56835400-56904800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
49 chr4:56837200-56905000 Weak transcription Brain Substantia Nigra brain
50 chr4:56837400-56854600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015