Variant report

Variant	rs41282938
Chromosome Location	chr11:17545141-17545142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11024312	0.80[EUR][1000 genomes]
rs11024318	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12271449	0.94[EUR][1000 genomes]
rs12271589	0.88[EUR][1000 genomes]
rs12287484	0.80[EUR][1000 genomes]
rs16934329	0.94[EUR][1000 genomes]
rs7109635	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv33415	chr11:17532596-17549436	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv934119	chr11:17542691-17548601	Weak transcription Genic enhancers Active TSS Bivalent Enhancer Enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17516800-17553000	Weak transcription	Stomach Mucosa	stomach
2	chr11:17527600-17549200	Strong transcription	Duodenum Mucosa	Duodenum
3	chr11:17529800-17548600	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr11:17531600-17547200	Strong transcription	Fetal Intestine Large	intestine
5	chr11:17531800-17552400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:17532200-17547200	Strong transcription	Fetal Intestine Small	intestine
7	chr11:17537400-17546800	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:17538400-17562200	Weak transcription	Small Intestine	intestine
9	chr11:17539600-17550000	Weak transcription	Spleen	Spleen
10	chr11:17540800-17552400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:17541000-17552600	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr11:17541400-17548000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:17541400-17552400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:17541600-17549600	Weak transcription	Brain Anterior Caudate	brain
15	chr11:17541600-17550000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:17541600-17551600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:17541600-17555800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:17542000-17547800	Weak transcription	Brain Hippocampus Middle	brain
19	chr11:17542000-17548000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:17542400-17547800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:17542600-17549400	Weak transcription	Brain Angular Gyrus	brain
22	chr11:17542600-17550000	Weak transcription	Brain Substantia Nigra	brain
23	chr11:17544000-17545400	Strong transcription	Gastric	stomach
24	chr11:17544000-17549800	Strong transcription	Colonic Mucosa	Colon
25	chr11:17544200-17548000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:17544600-17545200	Strong transcription	Fetal Stomach	stomach

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