Variant report
| Variant | rs41287914 |
|---|---|
| Chromosome Location | chr1:71251217-71251218 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CTH-1 | chr1:71250869-71252151 | ENSG00000229051 |
| 2 | lnc-CTH-1 | chr1:71250869-71252214 | XLOC_000246 |
| 3 | lnc-CTH-1 | chr1:71250869-71252149 | XLOC_000246 |
| 4 | lnc-CTH-1 | chr1:71250869-71251603 | NONHSAT003864 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11804440 | 0.92[EUR][1000 genomes] |
| rs11805293 | 0.92[EUR][1000 genomes] |
| rs11805731 | 0.99[ASN][1000 genomes] |
| rs11807666 | 0.92[EUR][1000 genomes] |
| rs11808587 | 0.92[EUR][1000 genomes] |
| rs11808606 | 0.92[EUR][1000 genomes] |
| rs11809115 | 0.92[EUR][1000 genomes] |
| rs12562897 | 0.97[ASN][1000 genomes] |
| rs12566076 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13306022 | 0.92[EUR][1000 genomes] |
| rs2300163 | 1.00[AFR][1000 genomes] |
| rs34115027 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34247575 | 0.92[EUR][1000 genomes] |
| rs34580971 | 0.92[EUR][1000 genomes] |
| rs35284022 | 0.92[EUR][1000 genomes] |
| rs35327754 | 0.92[EUR][1000 genomes] |
| rs35946140 | 0.92[EUR][1000 genomes] |
| rs35952145 | 0.92[EUR][1000 genomes] |
| rs57313668 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs58239962 | 0.92[EUR][1000 genomes] |
| rs60466683 | 0.92[EUR][1000 genomes] |
| rs60994441 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6667891 | 0.92[EUR][1000 genomes] |
| rs6683228 | 0.92[EUR][1000 genomes] |
| rs7411007 | 0.97[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:71251000-71251400 | Enhancers | K562 | blood |
