Variant report
| Variant | rs4129006 |
|---|---|
| Chromosome Location | chr1:71036277-71036278 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:71033867..71036861-chr1:71040910..71043155,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs11209634 | 0.85[EUR][1000 genomes] |
| rs3121981 | 0.85[EUR][1000 genomes] |
| rs3121983 | 0.99[ASN][1000 genomes] |
| rs4271153 | 0.85[EUR][1000 genomes] |
| rs4274012 | 0.85[EUR][1000 genomes] |
| rs4323655 | 0.99[ASN][1000 genomes] |
| rs4330877 | 0.95[ASN][1000 genomes] |
| rs4330878 | 0.85[EUR][1000 genomes] |
| rs4382663 | 0.85[EUR][1000 genomes] |
| rs4403581 | 0.99[ASN][1000 genomes] |
| rs4515743 | 0.85[EUR][1000 genomes] |
| rs4534335 | 0.85[EUR][1000 genomes] |
| rs4546874 | 0.85[EUR][1000 genomes] |
| rs4564088 | 0.85[ASN][1000 genomes] |
| rs4612580 | 0.85[EUR][1000 genomes] |
| rs4628459 | 0.85[EUR][1000 genomes] |
| rs4642835 | 0.85[EUR][1000 genomes] |
| rs4649918 | 0.85[EUR][1000 genomes] |
| rs4649919 | 0.85[EUR][1000 genomes] |
| rs4649921 | 0.85[EUR][1000 genomes] |
| rs4649923 | 0.99[ASN][1000 genomes] |
| rs4649928 | 0.95[ASN][1000 genomes] |
| rs4650060 | 0.85[EUR][1000 genomes] |
| rs4650061 | 0.85[EUR][1000 genomes] |
| rs4650063 | 0.85[EUR][1000 genomes] |
| rs4650064 | 0.85[EUR][1000 genomes] |
| rs6664775 | 0.85[EUR][1000 genomes] |
| rs6675749 | 0.85[EUR][1000 genomes] |
| rs6700601 | 0.85[EUR][1000 genomes] |
| rs6704118 | 0.85[EUR][1000 genomes] |
| rs7521069 | 0.85[EUR][1000 genomes] |
| rs7523040 | 0.99[ASN][1000 genomes] |
| rs9424946 | 0.85[EUR][1000 genomes] |
| rs9425029 | 0.85[EUR][1000 genomes] |
| rs9425031 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1005909 | chr1:71028151-71049347 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv945859 | chr1:71033919-71039807 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:71012600-71059800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
