Variant report

Variant	rs4133169
Chromosome Location	chr6:101565562-101565563
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11155850	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11155852	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11155855	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12164026	0.81[AMR][1000 genomes]
rs2770337	0.83[ASN][1000 genomes]
rs2797369	0.80[ASN][1000 genomes]
rs3905202	0.90[ASN][1000 genomes]
rs4143742	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4291101	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4385317	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58920424	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6906423	0.88[ASN][1000 genomes]
rs6912251	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6925287	0.82[ASN][1000 genomes]
rs6938926	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72610828	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72610830	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72610833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72610834	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72610835	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72610837	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7747415	0.85[ASN][1000 genomes]
rs7762966	0.83[ASN][1000 genomes]
rs7768736	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9322394	0.83[ASN][1000 genomes]
rs9373603	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9377259	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9377260	0.82[ASN][1000 genomes]
rs9377261	0.82[ASN][1000 genomes]
rs9377262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390721	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9390725	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9390729	0.83[ASN][1000 genomes]
rs9390731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399704	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9399710	0.83[ASN][1000 genomes]
rs9399711	0.85[ASN][1000 genomes]
rs9399712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9404080	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9404081	0.83[ASN][1000 genomes]
rs9404083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9404085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9404089	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9498509	0.83[ASN][1000 genomes]
rs9498510	0.83[ASN][1000 genomes]
rs9498511	0.84[ASN][1000 genomes]
rs9498515	0.85[ASN][1000 genomes]
rs9498520	0.85[ASN][1000 genomes]
rs9498521	0.85[ASN][1000 genomes]
rs9498522	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101564600-101566000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr6:101564600-101566400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:101564800-101565600	Weak transcription	Brain Germinal Matrix	brain
4	chr6:101565000-101566000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr6:101565200-101565600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:101565200-101565600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
7	chr6:101565200-101565600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr6:101565200-101565600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr6:101565200-101565600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:101565200-101565600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:101565200-101565600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:101565200-101565600	Enhancers	Brain Substantia Nigra	brain
13	chr6:101565200-101565600	Enhancers	Colonic Mucosa	Colon
14	chr6:101565200-101565800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr6:101565200-101566000	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr6:101565200-101566000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:101565200-101566000	Enhancers	Ovary	ovary
18	chr6:101565200-101566200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:101565200-101566200	Enhancers	A549	lung
20	chr6:101565400-101565600	Enhancers	Brain Hippocampus Middle	brain
21	chr6:101565400-101565600	Bivalent Enhancer	Esophagus	oesophagus
22	chr6:101565400-101565600	Enhancers	Left Ventricle	heart
23	chr6:101565400-101565600	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr6:101565400-101565800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr6:101565400-101566000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:101565400-101566000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:101565400-101566000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links