The 2.0 version of rSNPBase

Variant report

Variant rs41348545
Chromosome Location chr19:43017156-43017157
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:43002200-43025200 Weak transcription Primary hematopoietic stem cells blood
2 chr19:43002400-43022400 Weak transcription Lung lung
3 chr19:43002800-43023000 Weak transcription Gastric stomach
4 chr19:43003200-43030600 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr19:43003400-43019000 Weak transcription Placenta Placenta
6 chr19:43003400-43028400 Weak transcription Esophagus oesophagus
7 chr19:43003400-43029400 Weak transcription Small Intestine intestine
8 chr19:43006200-43029800 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr19:43009200-43023200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr19:43010200-43024800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
11 chr19:43010800-43023000 Weak transcription Primary T helper cells fromperipheralblood blood
12 chr19:43012200-43028200 Strong transcription Liver Liver
13 chr19:43012600-43017800 Strong transcription Fetal Adrenal Gland Adrenal Gland
14 chr19:43013800-43032000 Weak transcription Primary T killer naive cells fromperipheralblood blood
15 chr19:43014400-43019800 Strong transcription Primary neutrophils fromperipheralblood blood
16 chr19:43014600-43017200 Strong transcription Primary B cells from cord blood blood
17 chr19:43014600-43017400 Strong transcription Breast Myoepithelial Primary Cells Breast
18 chr19:43014600-43024400 Weak transcription Fetal Stomach stomach
19 chr19:43014800-43017400 Enhancers iPS-18 Cell Line embryonic stem cell
20 chr19:43014800-43018600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr19:43014800-43022000 Strong transcription HepG2 liver
22 chr19:43015000-43019800 Strong transcription Fetal Intestine Small intestine
23 chr19:43015200-43018600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr19:43015400-43018600 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr19:43015600-43017200 Weak transcription H9 Cell Line embryonic stem cell
26 chr19:43015600-43018000 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr19:43015600-43023000 Weak transcription Primary T helper naive cells fromperipheralblood blood
28 chr19:43015600-43030800 Weak transcription Left Ventricle heart
29 chr19:43015800-43019200 Weak transcription HUES64 Cell Line embryonic stem cell
30 chr19:43015800-43025400 Weak transcription Primary hematopoietic stem cells short term culture blood
31 chr19:43016000-43018600 Weak transcription Fetal Intestine Large intestine
32 chr19:43016000-43018600 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr19:43016000-43032400 Weak transcription Brain Anterior Caudate brain
34 chr19:43016200-43018000 Flanking Active TSS GM12878-XiMat blood
35 chr19:43016200-43023200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
36 chr19:43016400-43017400 Enhancers Primary T helper 17 cells PMA-I stimulated --
37 chr19:43016400-43017800 Enhancers Primary B cells from peripheral blood blood
38 chr19:43016400-43018600 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr19:43016400-43025000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr19:43016600-43017800 Weak transcription iPS-15b Cell Line embryonic stem cell
41 chr19:43016600-43018600 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr19:43016600-43018600 Weak transcription Duodenum Mucosa Duodenum
43 chr19:43016600-43018800 Weak transcription Primary T cells from cord blood blood
44 chr19:43016600-43022000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
45 chr19:43016600-43023200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
46 chr19:43016600-43023600 Weak transcription Spleen Spleen
47 chr19:43016600-43024200 Weak transcription Colonic Mucosa Colon
48 chr19:43016600-43024800 Weak transcription Adipose Nuclei Adipose
49 chr19:43016600-43029400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
50 chr19:43016600-43031800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015