Variant report

Variant	rs41373345
Chromosome Location	chr7:104409391-104409392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11983223	1.00[GIH][hapmap]
rs12705266	0.94[CHD][hapmap]
rs17141055	1.00[CHB][hapmap]
rs17141299	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs4436063	0.88[CHD][hapmap];1.00[GIH][hapmap]
rs4730044	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv429792	chr7:104400049-104488049	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5887	chr7:104401250-104491604	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1030875	chr7:104409391-104472647	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1028479	chr7:104409391-104479087	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104406000-104410400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:104408600-104409400	Enhancers	Brain Angular Gyrus	brain
3	chr7:104408600-104409400	Enhancers	Brain Cingulate Gyrus	brain
4	chr7:104408600-104409600	Enhancers	Brain Anterior Caudate	brain
5	chr7:104408600-104411800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:104408800-104409400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:104408800-104409400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr7:104408800-104409800	Enhancers	Brain Hippocampus Middle	brain
9	chr7:104409200-104412400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:104409200-104412800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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