Variant report

Variant	rs413858
Chromosome Location	chr11:16907984-16907985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16903057..16904969-chr11:16906210..16908722,2	K562	blood:

Variant related genes	Relation type
ENSG00000166689	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12418111	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1638456	0.88[ASN][1000 genomes]
rs1638457	0.90[ASN][1000 genomes]
rs16933675	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16933680	0.81[ASN][1000 genomes]
rs16933682	0.81[ASN][1000 genomes]
rs177544	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs177546	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs177551	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs177554	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35005405	0.81[ASN][1000 genomes]
rs35109048	0.83[ASN][1000 genomes]
rs367373	0.80[ASN][1000 genomes]
rs378863	0.90[ASN][1000 genomes]
rs381815	0.93[ASN][1000 genomes]
rs388968	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs391332	0.87[ASN][1000 genomes]
rs393633	0.90[ASN][1000 genomes]
rs397373	0.88[ASN][1000 genomes]
rs407354	0.90[ASN][1000 genomes]
rs414219	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs414992	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs416258	0.80[ASN][1000 genomes]
rs422272	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs425325	0.90[ASN][1000 genomes]
rs426570	0.82[ASN][1000 genomes]
rs427429	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs428840	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs432046	0.90[ASN][1000 genomes]
rs434899	0.90[ASN][1000 genomes]
rs435206	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs438751	0.83[ASN][1000 genomes]
rs445205	0.90[ASN][1000 genomes]
rs445431	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs446518	0.90[ASN][1000 genomes]
rs448671	0.93[ASN][1000 genomes]
rs4757445	0.83[ASN][1000 genomes]
rs58542530	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59828007	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61882035	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61882036	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61882037	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61882038	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs758402	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7926335	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16898400-16908400	Weak transcription	HepG2	liver
2	chr11:16903200-16908800	Weak transcription	Fetal Intestine Small	intestine
3	chr11:16903600-16908800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:16903600-16914400	Weak transcription	Right Atrium	heart
5	chr11:16905200-16909000	Weak transcription	Esophagus	oesophagus
6	chr11:16905200-16909200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:16905200-16909200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:16905200-16913600	Weak transcription	Gastric	stomach
9	chr11:16905200-16913600	Weak transcription	Pancreas	Pancrea
10	chr11:16907600-16908000	Enhancers	Fetal Heart	heart

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