Variant report
| Variant | rs41391648 |
|---|---|
| Chromosome Location | chr1:195778498-195778499 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:195772551..195774478-chr1:195777510..195779769,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10218627 | 0.81[AFR][1000 genomes] |
| rs12057268 | 0.84[AFR][1000 genomes] |
| rs12092340 | 1.00[AMR][1000 genomes] |
| rs12092898 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56759581 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58331542 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61046734 | 0.90[AFR][1000 genomes] |
| rs61512857 | 0.81[AFR][1000 genomes] |
| rs74132921 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74132922 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74132923 | 0.81[AFR][1000 genomes] |
| rs74132924 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7527210 | 0.81[AFR][1000 genomes] |
| rs7537832 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7538590 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7540417 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7540814 | 0.81[AFR][1000 genomes] |
| rs7540904 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7548571 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs990925 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs990926 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872937 | chr1:195493538-195849028 | Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv1007203 | chr1:195672857-195902360 | Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv998365 | chr1:195755734-195779949 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv872941 | chr1:195770204-195820337 | Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:195764400-195789400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
