Variant report

Variant	rs4140860
Chromosome Location	chr7:103857302-103857303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103846910..103851184-chr7:103856864..103861366,6	MCF-7	breast:
2	chr7:103855618..103859131-chr7:103859954..103863291,3	MCF-7	breast:
3	chr7:103847113..103849971-chr7:103857214..103859263,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164815	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10236259	0.84[AFR][1000 genomes]
rs10236401	0.86[AFR][1000 genomes]
rs10265732	0.86[AFR][1000 genomes]
rs10265960	0.86[AFR][1000 genomes]
rs10265985	0.86[AFR][1000 genomes]
rs1035169	0.95[ASN][1000 genomes]
rs10808128	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10953407	0.88[AFR][1000 genomes]
rs10953408	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10953409	0.87[AFR][1000 genomes]
rs10953410	0.87[AFR][1000 genomes]
rs11973848	0.86[AFR][1000 genomes]
rs11980573	0.86[AFR][1000 genomes]
rs12056186	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12056191	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12705181	0.90[ASN][1000 genomes]
rs12705187	0.90[ASN][1000 genomes]
rs12705188	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12705190	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12705191	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12705192	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12705193	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12705195	0.95[ASN][1000 genomes]
rs13230700	0.90[ASN][1000 genomes]
rs13238183	0.92[ASN][1000 genomes]
rs13438174	0.80[AFR][1000 genomes]
rs13438176	0.80[AFR][1000 genomes]
rs193888	0.97[ASN][1000 genomes]
rs194841	0.81[ASN][1000 genomes]
rs194849	0.81[ASN][1000 genomes]
rs2075219	0.86[AFR][1000 genomes]
rs2075220	0.86[AFR][1000 genomes]
rs2160397	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2245659	0.95[ASN][1000 genomes]
rs2283035	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2299409	0.84[ASN][1000 genomes]
rs2299411	0.95[ASN][1000 genomes]
rs2385140	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28372965	0.81[AFR][1000 genomes]
rs3087358	0.84[AFR][1000 genomes]
rs34096272	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35034355	0.95[ASN][1000 genomes]
rs3757734	0.91[ASN][1000 genomes]
rs3779518	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3808008	0.84[ASN][1000 genomes]
rs4265123	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4265124	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4286867	0.85[AFR][1000 genomes]
rs4370466	0.83[AFR][1000 genomes]
rs4370467	0.90[AFR][1000 genomes]
rs4385404	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4445159	0.87[AFR][1000 genomes]
rs4461830	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4486111	0.90[AFR][1000 genomes]
rs62485910	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6948440	0.90[AFR][1000 genomes]
rs6948583	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6948673	0.88[AFR][1000 genomes]
rs6948723	0.90[AFR][1000 genomes]
rs6961262	0.84[ASN][1000 genomes]
rs6962673	0.90[AFR][1000 genomes]
rs6967757	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968451	0.90[AFR][1000 genomes]
rs765408	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7781828	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019640	chr7:103813522-103884705	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
2	nsv1026481	chr7:103813522-103890770	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	esv2762692	chr7:103813522-103890782	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
4	nsv526062	chr7:103817597-103891085	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	nsv608065	chr7:103817597-103990755	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	nsv1029571	chr7:103855890-103909757	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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