Variant report

Variant	rs4141410
Chromosome Location	chr7:126737746-126737747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1006728	0.93[JPT][hapmap]
rs10225883	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs10954144	0.80[CHB][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap]
rs11563708	0.93[JPT][hapmap]
rs11563717	0.93[JPT][hapmap]
rs11563719	0.93[JPT][hapmap]
rs11563728	0.93[JPT][hapmap]
rs11760208	0.93[JPT][hapmap]
rs1361954	0.86[JPT][hapmap]
rs1361963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1419424	0.80[ASW][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap]
rs1419446	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs17864136	0.93[JPT][hapmap];0.89[YRI][hapmap]
rs17864137	0.93[JPT][hapmap]
rs1894731	0.93[JPT][hapmap]
rs2010184	0.80[CHB][hapmap];0.93[JPT][hapmap]
rs2237780	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs2237784	0.93[JPT][hapmap]
rs2237786	0.93[JPT][hapmap]
rs2237789	0.93[JPT][hapmap]
rs2237790	0.80[CHD][hapmap];0.93[JPT][hapmap]
rs2237791	0.93[JPT][hapmap]
rs2237792	0.93[JPT][hapmap];0.89[YRI][hapmap]
rs2283090	0.93[JPT][hapmap]
rs2283091	0.93[JPT][hapmap]
rs2283092	0.93[JPT][hapmap]
rs2283093	0.93[JPT][hapmap]
rs2283095	0.93[JPT][hapmap]
rs2283096	0.93[JPT][hapmap]
rs2299525	0.93[JPT][hapmap]
rs2299530	0.80[CHB][hapmap];0.93[JPT][hapmap]
rs2299535	0.93[JPT][hapmap]
rs2299537	0.93[JPT][hapmap]
rs2299538	0.93[JPT][hapmap]
rs2299539	0.93[JPT][hapmap]
rs2299541	0.93[JPT][hapmap]
rs3808122	0.93[JPT][hapmap]
rs3808127	0.93[JPT][hapmap]
rs6942923	0.93[JPT][hapmap]
rs6949620	0.93[JPT][hapmap]
rs6964926	0.86[JPT][hapmap]
rs6975798	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6978939	0.93[JPT][hapmap]
rs6979287	0.81[CHD][hapmap];0.93[JPT][hapmap]
rs6979572	0.86[JPT][hapmap]
rs7778276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778308	0.85[CHB][hapmap];0.93[JPT][hapmap];0.83[TSI][hapmap]
rs7791539	0.80[ASW][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap]
rs7792406	0.86[JPT][hapmap]
rs951111	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4141410	IQUB	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126735200-126742400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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