Variant report

Variant	rs4141906
Chromosome Location	chr1:172154612-172154613
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172153958..172156265-chr1:172172390..172174263,2	K562	blood:
2	chr1:172146908..172150355-chr1:172151675..172155662,5	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16843972	0.83[EUR][1000 genomes]
rs16844080	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000079	chr1:172146935-172230545	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172150800-172155600	Enhancers	Fetal Lung	lung
2	chr1:172150800-172159000	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:172151000-172160800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:172151600-172154800	Weak transcription	Primary T cells from cord blood	blood
5	chr1:172152800-172155600	Enhancers	Ovary	ovary
6	chr1:172152800-172156000	Enhancers	Fetal Muscle Leg	muscle
7	chr1:172153200-172157800	Enhancers	Primary B cells from cord blood	blood
8	chr1:172153400-172154800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:172153400-172154800	Enhancers	Fetal Intestine Small	intestine
10	chr1:172153400-172155800	Enhancers	Fetal Stomach	stomach
11	chr1:172153600-172154800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:172153600-172154800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr1:172153600-172154800	Enhancers	Small Intestine	intestine
14	chr1:172153600-172155400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:172153600-172155400	Enhancers	Osteobl	bone
16	chr1:172153600-172155600	Enhancers	NHDF-Ad	bronchial
17	chr1:172153800-172154800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:172153800-172154800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr1:172153800-172154800	Enhancers	Brain Hippocampus Middle	brain
20	chr1:172153800-172154800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr1:172153800-172154800	Enhancers	NHLF	lung
22	chr1:172153800-172155000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr1:172153800-172155200	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr1:172153800-172155200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr1:172153800-172155400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr1:172153800-172155400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:172153800-172155600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr1:172153800-172155800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr1:172153800-172156200	Enhancers	Fetal Kidney	kidney
30	chr1:172154000-172154800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:172154000-172154800	Enhancers	Brain Anterior Caudate	brain
32	chr1:172154000-172154800	Enhancers	Colon Smooth Muscle	Colon
33	chr1:172154000-172154800	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr1:172154000-172155000	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr1:172154000-172155200	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr1:172154000-172155400	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr1:172154000-172155400	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr1:172154000-172155400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr1:172154000-172155400	Enhancers	A549	lung
40	chr1:172154000-172156000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr1:172154000-172161000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr1:172154200-172154800	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr1:172154200-172154800	Enhancers	Brain Angular Gyrus	brain
44	chr1:172154200-172154800	Enhancers	Brain Substantia Nigra	brain
45	chr1:172154200-172154800	Enhancers	Duodenum Mucosa	Duodenum
46	chr1:172154200-172154800	Enhancers	Fetal Heart	heart
47	chr1:172154200-172154800	Enhancers	Hela-S3	cervix
48	chr1:172154200-172155000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr1:172154200-172155000	Enhancers	Fetal Intestine Large	intestine
50	chr1:172154200-172155400	Enhancers	H1 Cell Line	embryonic stem cell

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