Variant report

Variant	rs4142274
Chromosome Location	chr13:67636769-67636770
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1023033	0.91[CHB][hapmap];0.95[CHD][hapmap];0.90[LWK][hapmap];0.84[YRI][hapmap];0.87[ASN][1000 genomes]
rs12875136	0.81[ASN][1000 genomes]
rs1323903	0.80[CHD][hapmap]
rs1927826	0.93[MEX][hapmap]
rs2181753	0.95[CHB][hapmap];0.80[ASN][1000 genomes]
rs260150	0.81[CHD][hapmap]
rs260152	0.86[CHD][hapmap];0.93[MEX][hapmap];0.80[TSI][hapmap]
rs260153	0.82[CEU][hapmap]
rs260156	0.82[CHD][hapmap]
rs7327414	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs9317635	0.87[ASN][1000 genomes]
rs9317638	0.89[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs9529172	0.81[ASN][1000 genomes]
rs9529173	0.84[YRI][hapmap]
rs9529175	0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs9529179	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9540973	0.95[CHB][hapmap];0.80[ASN][1000 genomes]
rs9540981	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9540985	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9540991	0.86[ASN][1000 genomes]
rs9571711	0.86[ASN][1000 genomes]
rs9571712	0.83[CHB][hapmap];0.86[ASN][1000 genomes]
rs9571716	0.93[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv428604	chr13:67480426-67645030	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900414	chr13:67515590-67701341	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1045093	chr13:67517932-67693875	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv541821	chr13:67517932-67693875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67634400-67637200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:67634800-67636800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:67635600-67645000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:67635800-67638400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr13:67635800-67639600	Enhancers	Brain Substantia Nigra	brain
6	chr13:67636000-67636800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:67636000-67636800	Enhancers	Adipose Nuclei	Adipose
8	chr13:67636000-67636800	Flanking Active TSS	Brain Cingulate Gyrus	brain
9	chr13:67636000-67636800	Flanking Active TSS	Brain Hippocampus Middle	brain
10	chr13:67636000-67637200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:67636000-67637800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr13:67636000-67638000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr13:67636200-67637200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr13:67636200-67637800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:67636400-67636800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:67636400-67636800	Enhancers	Fetal Lung	lung
17	chr13:67636400-67637000	Enhancers	Brain Anterior Caudate	brain
18	chr13:67636400-67637800	Enhancers	A549	lung
19	chr13:67636400-67638000	Enhancers	Brain Angular Gyrus	brain
20	chr13:67636600-67640200	Enhancers	Brain Inferior Temporal Lobe	brain

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