Variant report

Variant	rs4142625
Chromosome Location	chr6:64346402-64346403
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64344409..64347843-chr6:64354565..64357497,3	MCF-7	breast:
2	chr6:64280920..64286126-chr6:64341540..64349518,16	K562	blood:
3	chr6:64345547..64349156-chr6:64414533..64419389,4	K562	blood:
4	chr6:64344971..64347047-chr6:64415769..64418263,2	K562	blood:
5	chr6:64282300..64285121-chr6:64344482..64347606,3	MCF-7	breast:
6	chr6:64281350..64286126-chr6:64342580..64350015,13	K562	blood:

Variant related genes	Relation type
ENSG00000112245	Chromatin interaction
ENSG00000118482	Chromatin interaction
ENSG00000266680	Chromatin interaction

rs_ID	r²[population]
rs11756799	0.80[ASN][1000 genomes]
rs11756833	0.80[ASN][1000 genomes]
rs11758738	0.80[ASN][1000 genomes]
rs1197983	0.86[AMR][1000 genomes]
rs1681939	0.81[ASN][1000 genomes]
rs1905593	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3757350	0.80[ASN][1000 genomes]
rs3778648	0.80[ASN][1000 genomes]
rs3800491	0.80[ASN][1000 genomes]
rs3800492	0.80[ASN][1000 genomes]
rs3800493	0.80[ASN][1000 genomes]
rs3823446	0.80[ASN][1000 genomes]
rs41271589	0.86[AMR][1000 genomes]
rs56300303	0.80[ASN][1000 genomes]
rs57280061	0.86[AMR][1000 genomes]
rs61369019	0.80[ASN][1000 genomes]
rs66520187	0.80[ASN][1000 genomes]
rs66882701	0.86[AMR][1000 genomes]
rs67169857	0.84[AMR][1000 genomes]
rs67342772	0.80[ASN][1000 genomes]
rs67674014	0.84[AMR][1000 genomes]
rs68128834	0.84[AMR][1000 genomes]
rs6911092	0.80[ASN][1000 genomes]
rs72884634	0.80[ASN][1000 genomes]
rs72884640	0.80[ASN][1000 genomes]
rs958324	0.80[ASN][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64344800-64347400	Active TSS	Fetal Muscle Trunk	muscle
2	chr6:64344800-64347800	Active TSS	Thymus	Thymus
3	chr6:64344800-64348000	Active TSS	Stomach Smooth Muscle	stomach
4	chr6:64345000-64347000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:64345000-64347200	Active TSS	Aorta	Aorta
6	chr6:64345000-64347200	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr6:64345000-64347200	Active TSS	Fetal Brain Female	brain
8	chr6:64345000-64347200	Active TSS	HSMM	muscle
9	chr6:64345000-64347400	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr6:64345000-64347400	Active TSS	Fetal Brain Male	brain
11	chr6:64345000-64347400	Active TSS	Fetal Kidney	kidney
12	chr6:64345000-64347400	Active TSS	Psoas Muscle	Psoas
13	chr6:64345000-64347400	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr6:64345000-64347600	Active TSS	Brain Hippocampus Middle	brain
15	chr6:64345000-64347600	Active TSS	Rectal Mucosa Donor 31	rectum
16	chr6:64345000-64347600	Active TSS	NHLF	lung
17	chr6:64345000-64347800	Active TSS	H9 Cell Line	embryonic stem cell
18	chr6:64345000-64347800	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr6:64345000-64347800	Active TSS	Brain Angular Gyrus	brain
20	chr6:64345000-64348200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:64345200-64347000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:64345200-64347000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:64345200-64347000	Active TSS	Esophagus	oesophagus
24	chr6:64345200-64347000	Active TSS	Gastric	stomach
25	chr6:64345200-64347000	Active TSS	Left Ventricle	heart
26	chr6:64345200-64347000	Active TSS	Lung	lung
27	chr6:64345200-64347200	Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr6:64345200-64347200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:64345200-64347400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:64345200-64347400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:64345200-64347400	Active TSS	Placenta Amnion	Placenta Amnion
32	chr6:64345200-64347400	Active TSS	Right Ventricle	heart
33	chr6:64345200-64347600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr6:64345200-64347600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:64345200-64347600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:64345200-64347600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:64345200-64347800	Active TSS	Ovary	ovary
38	chr6:64345200-64348000	Active TSS	H1 Cell Line	embryonic stem cell
39	chr6:64345200-64348200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:64345200-64348200	Active TSS	Fetal Intestine Large	intestine
41	chr6:64345200-64348600	Active TSS	GM12878-XiMat	blood
42	chr6:64345400-64346600	Active TSS	Adipose Nuclei	Adipose
43	chr6:64345400-64346800	Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr6:64345400-64346800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:64345400-64346800	Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr6:64345400-64346800	Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr6:64345400-64347000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:64345400-64347000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:64345400-64347000	Active TSS	Primary T cells from cord blood	blood
50	chr6:64345400-64347000	Active TSS	Primary hematopoietic stem cells short term culture	blood

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