Variant report

Variant	rs4143093
Chromosome Location	chr13:96213208-96213209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1000600	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1408606	0.87[CHB][hapmap]
rs17235320	0.88[CHB][hapmap]
rs4459440	0.96[ASN][1000 genomes]
rs4497528	0.87[ASW][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.85[YRI][hapmap];0.89[ASN][1000 genomes]
rs7338545	0.86[CHB][hapmap]
rs7990560	0.89[ASN][1000 genomes]
rs9302082	0.94[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9556489	0.96[ASN][1000 genomes]
rs9561901	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9561907	0.94[ASN][1000 genomes]
rs9590305	0.87[ASW][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.85[YRI][hapmap];0.89[ASN][1000 genomes]
rs962320	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96206600-96231000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:96206800-96230200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:96207000-96216800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:96207200-96216600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr13:96208600-96230000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:96209200-96229000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr13:96210400-96229800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:96210600-96215000	Weak transcription	Fetal Lung	lung
9	chr13:96211000-96220600	Weak transcription	Pancreas	Pancrea
10	chr13:96211400-96215200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr13:96212400-96231000	Weak transcription	Fetal Kidney	kidney
12	chr13:96213200-96220600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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