Variant report

Variant	rs41441147
Chromosome Location	chr3:25158418-25158419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs34155045	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41530749	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4485683	0.88[ASN][1000 genomes]
rs4558719	0.88[ASN][1000 genomes]
rs56023574	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56098835	0.84[AMR][1000 genomes]
rs62230277	0.82[AMR][1000 genomes]
rs62230292	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62230293	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62230297	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73047766	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs41441147	TOP2B	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25156400-25159200	Weak transcription	Fetal Heart	heart
2	chr3:25157600-25159000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:25157800-25159400	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr3:25158000-25159000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:25158000-25159200	Enhancers	Stomach Mucosa	stomach
6	chr3:25158200-25159000	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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