Variant report

Variant	rs41459051
Chromosome Location	chr3:46232046-46232047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11916331	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11916576	1.00[EUR][1000 genomes]
rs11916833	1.00[EUR][1000 genomes]
rs11919361	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11919363	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923521	1.00[EUR][1000 genomes]
rs17078694	0.81[AFR][1000 genomes]
rs17078698	0.81[AFR][1000 genomes]
rs41405546	0.81[AFR][1000 genomes]
rs41491548	0.81[AFR][1000 genomes]
rs41491747	0.81[AFR][1000 genomes]
rs41511545	0.81[AFR][1000 genomes]
rs41537245	0.81[AFR][1000 genomes]
rs7610869	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46228600-46232800	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr3:46229600-46233200	Weak transcription	Spleen	Spleen
3	chr3:46229800-46233000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:46229800-46234800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:46230000-46232800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:46230000-46234800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:46230200-46233200	Weak transcription	Primary B cells from cord blood	blood
8	chr3:46230600-46233000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr3:46231400-46232400	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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