Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10483838	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs17105025	0.81[JPT][hapmap]
rs17105032	0.81[JPT][hapmap]
rs17105061	0.81[JPT][hapmap]
rs1860105	0.81[JPT][hapmap]
rs2052014	0.85[CHD][hapmap];0.93[JPT][hapmap]
rs2190872	0.81[JPT][hapmap]
rs2238266	0.93[JPT][hapmap]
rs2238274	0.81[JPT][hapmap]
rs2238276	0.81[JPT][hapmap]
rs2239266	0.80[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs2332706	0.86[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap]
rs3784054	0.80[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs41389946	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4902960	0.81[JPT][hapmap]
rs4902965	0.81[JPT][hapmap]
rs4902972	0.86[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap]
rs764624	0.81[JPT][hapmap]
rs8017221	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs8017799	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs966815	0.85[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72479200-72481200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:72480200-72480600	Enhancers	Brain Anterior Caudate	brain
3	chr14:72480200-72480600	Enhancers	Brain Substantia Nigra	brain
4	chr14:72480200-72480800	Active TSS	Brain Hippocampus Middle	brain
5	chr14:72480200-72480800	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr14:72480200-72481000	Enhancers	Brain Angular Gyrus	brain
7	chr14:72480200-72481400	Enhancers	Fetal Muscle Leg	muscle
8	chr14:72480400-72480600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:72480400-72481000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:72480600-72480800	Flanking Active TSS	Brain Substantia Nigra	brain
11	chr14:72480600-72481000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:72480600-72481000	Flanking Active TSS	Brain Anterior Caudate	brain
13	chr14:72480600-72481000	Active TSS	Brain Cingulate Gyrus	brain

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