Variant report

Variant	rs41495948
Chromosome Location	chr3:85130642-85130643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11127881	0.80[AMR][1000 genomes]
rs1376937	0.90[AMR][1000 genomes]
rs17022413	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17022521	0.90[AMR][1000 genomes]
rs17022531	0.90[AMR][1000 genomes]
rs17022571	0.90[AMR][1000 genomes]
rs1901545	0.90[AMR][1000 genomes]
rs2101343	0.91[AMR][1000 genomes]
rs2167605	0.80[AMR][1000 genomes]
rs28658170	0.90[AMR][1000 genomes]
rs28706252	0.90[AMR][1000 genomes]
rs56701506	0.91[AMR][1000 genomes]
rs57628546	0.90[AMR][1000 genomes]
rs58051057	0.90[AMR][1000 genomes]
rs58222692	0.90[AMR][1000 genomes]
rs59523340	0.83[AMR][1000 genomes]
rs59867516	0.90[AMR][1000 genomes]
rs59905205	0.90[AMR][1000 genomes]
rs59907126	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs60184399	0.90[AMR][1000 genomes]
rs60222151	0.90[AMR][1000 genomes]
rs60319509	0.90[AMR][1000 genomes]
rs61212713	1.00[AMR][1000 genomes]
rs6770568	0.91[AMR][1000 genomes]
rs6783617	0.91[AMR][1000 genomes]
rs6791040	0.80[AMR][1000 genomes]
rs6804299	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6809971	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72903365	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72903370	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72903381	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72903386	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905240	1.00[AMR][1000 genomes]
rs72905270	0.91[AMR][1000 genomes]
rs72905294	0.90[AMR][1000 genomes]
rs72905295	0.90[AMR][1000 genomes]
rs72907103	0.90[AMR][1000 genomes]
rs72907149	0.90[AMR][1000 genomes]
rs72907158	0.90[AMR][1000 genomes]
rs72907161	0.90[AMR][1000 genomes]
rs72907167	0.90[AMR][1000 genomes]
rs72907169	0.90[AMR][1000 genomes]
rs72907192	0.90[AMR][1000 genomes]
rs72909170	0.80[AMR][1000 genomes]
rs72909172	0.80[AMR][1000 genomes]
rs72909174	0.80[AMR][1000 genomes]
rs72909176	0.80[AMR][1000 genomes]
rs7614097	0.90[AMR][1000 genomes]
rs7632253	1.00[AMR][1000 genomes]
rs7643603	0.90[AMR][1000 genomes]
rs7644008	0.90[AMR][1000 genomes]
rs7649410	0.83[AMR][1000 genomes]
rs9917693	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590897	chr3:85122624-85187085	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85122400-85130800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:85130000-85132000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:85130200-85131400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:85130400-85131000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:85130400-85131000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:85130400-85131000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:85130400-85131000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr3:85130400-85131200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr3:85130400-85131600	Enhancers	Brain Anterior Caudate	brain
10	chr3:85130400-85132000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr3:85130400-85132000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:85130400-85132000	Enhancers	Brain Angular Gyrus	brain
13	chr3:85130400-85132200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:85130400-85132200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:85130400-85133800	Enhancers	Brain Substantia Nigra	brain
16	chr3:85130600-85130800	Enhancers	Brain Cingulate Gyrus	brain
17	chr3:85130600-85130800	Active TSS	A549	lung
18	chr3:85130600-85131200	Enhancers	Fetal Brain Male	brain
19	chr3:85130600-85131400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr3:85130600-85131400	Enhancers	Colon Smooth Muscle	Colon
21	chr3:85130600-85131800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:85130600-85131800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr3:85130600-85132000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr3:85130600-85132000	Enhancers	Brain Hippocampus Middle	brain
25	chr3:85130600-85132200	Enhancers	Fetal Lung	lung

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