Variant report

Variant	rs4150553
Chromosome Location	chr11:18352206-18352207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:18342879..18346241-chr11:18346771..18352447,12	MCF-7	breast:
2	chr11:18349490..18352307-chr11:18416120..18418950,3	MCF-7	breast:
3	chr11:18350549..18352457-chr11:18378892..18380710,2	K562	blood:
4	chr11:18350526..18353527-chr11:18357555..18360928,3	K562	blood:
5	chr11:18300718..18302528-chr11:18350970..18352624,2	MCF-7	breast:
6	chr11:18350460..18352865-chr11:18416240..18418848,2	K562	blood:
7	chr11:18349169..18352444-chr11:18352631..18354865,4	K562	blood:
8	chr11:18350612..18353421-chr11:18414692..18417585,3	MCF-7	breast:
9	chr11:18350532..18352791-chr11:18365222..18367749,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000134333	Chromatin interaction
ENSG00000110768	Chromatin interaction
ENSG00000110756	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2124373	1.00[EUR][1000 genomes]
rs4150592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4150597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4150647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4150672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4150677	1.00[EUR][1000 genomes]
rs750948	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv933836	chr11:18300254-18440933	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18344800-18353400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:18345000-18353400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:18345000-18383200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:18345000-18405000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:18346200-18352600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:18346200-18355200	Weak transcription	Colonic Mucosa	Colon
7	chr11:18346400-18353000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:18346400-18353400	Weak transcription	Pancreas	Pancrea
9	chr11:18346400-18354600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:18346400-18355200	Weak transcription	Gastric	stomach
11	chr11:18346400-18355200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:18346400-18357000	Weak transcription	Esophagus	oesophagus
13	chr11:18346400-18358400	Weak transcription	Right Ventricle	heart
14	chr11:18346400-18358600	Weak transcription	Fetal Brain Male	brain
15	chr11:18346600-18353200	Weak transcription	Brain Germinal Matrix	brain
16	chr11:18346600-18355200	Weak transcription	Fetal Kidney	kidney
17	chr11:18346600-18355200	Weak transcription	Ovary	ovary
18	chr11:18346800-18352400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr11:18346800-18353200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:18346800-18354400	Weak transcription	NHLF	lung
21	chr11:18346800-18354600	Weak transcription	Brain Angular Gyrus	brain
22	chr11:18346800-18354600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:18346800-18354600	Weak transcription	HSMMtube	muscle
24	chr11:18346800-18355000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:18346800-18355000	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:18346800-18355000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:18346800-18355200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:18346800-18372000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:18346800-18382800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:18346800-18390400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:18347000-18353000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr11:18347000-18372400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:18347000-18387400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr11:18347400-18366800	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr11:18347400-18371200	Strong transcription	Fetal Muscle Trunk	muscle
36	chr11:18347800-18353600	Weak transcription	NHDF-Ad	bronchial
37	chr11:18347800-18368200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:18348000-18371200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr11:18348200-18355800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:18348400-18352600	Strong transcription	HSMM	muscle
41	chr11:18348400-18365800	Strong transcription	Osteobl	bone
42	chr11:18348800-18354000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr11:18349200-18353400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:18349400-18353400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:18349400-18354000	Weak transcription	HUVEC	blood vessel
46	chr11:18349400-18354600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr11:18349400-18355000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:18349600-18357400	Weak transcription	Small Intestine	intestine
49	chr11:18350200-18352600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:18350400-18352800	Flanking Active TSS	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links