Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10002802	0.90[ASN][1000 genomes]
rs10032574	0.95[ASN][1000 genomes]
rs11098575	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11098576	0.98[ASN][1000 genomes]
rs11098577	0.98[ASN][1000 genomes]
rs11722669	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11732932	0.88[AMR][1000 genomes]
rs11937849	0.85[ASN][1000 genomes]
rs12651230	0.97[ASN][1000 genomes]
rs1390552	0.95[ASN][1000 genomes]
rs1496254	0.95[ASN][1000 genomes]
rs1496257	0.97[ASN][1000 genomes]
rs1566022	0.97[ASN][1000 genomes]
rs17051029	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17341782	0.92[ASN][1000 genomes]
rs2220961	0.95[ASN][1000 genomes]
rs4485827	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56350721	0.97[ASN][1000 genomes]
rs62322999	0.96[ASN][1000 genomes]
rs62323001	0.81[ASN][1000 genomes]
rs6534200	0.95[ASN][1000 genomes]
rs6534201	0.95[ASN][1000 genomes]
rs6813022	0.95[ASN][1000 genomes]
rs6835273	0.97[ASN][1000 genomes]
rs7688874	0.96[ASN][1000 genomes]
rs9996871	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv879853	chr4:121292665-121513215	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv879854	chr4:121457685-121489983	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121483200-121484400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:121483600-121483800	ZNF genes & repeats	Fetal Lung	lung

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