Variant report

Variant	rs415265
Chromosome Location	chr11:16860811-16860812
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1638456	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1638457	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2057788	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs369457	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs370053	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs370671	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs371905	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs373266	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs376641	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs378863	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs379051	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs380655	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs382280	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs385627	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs385943	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs387849	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs389967	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs390974	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs391332	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs392706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs393633	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs397343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs397373	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs398216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs400085	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs400349	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs400458	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs401820	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs402982	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs404492	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs406109	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs406890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs406937	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs407354	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs407932	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs409354	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs417349	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs417406	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs418034	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs420975	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs425325	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs425745	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs426085	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs427429	0.80[AMR][1000 genomes]
rs428933	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs429368	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs430211	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431208	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs432046	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs432656	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs433212	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs433225	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs434761	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs434899	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs435206	0.80[AMR][1000 genomes]
rs439224	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs440212	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs443327	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs445146	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs445205	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs446518	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs446612	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs450828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs452414	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs452745	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs453015	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs454538	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs454869	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58555284	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951328	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16813200-16871400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:16823000-16871400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:16836000-16861600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:16839200-16878800	Weak transcription	Thymus	Thymus
5	chr11:16842400-16862200	Weak transcription	Fetal Kidney	kidney
6	chr11:16842600-16873400	Weak transcription	Hela-S3	cervix
7	chr11:16842800-16862200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:16843000-16874600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:16844000-16862000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:16844400-16861200	Weak transcription	HMEC	breast
11	chr11:16846600-16874000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:16847000-16864000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:16847000-16871200	Weak transcription	Brain Substantia Nigra	brain
14	chr11:16847200-16871400	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:16847800-16865000	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:16847800-16871600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:16848000-16862400	Weak transcription	Adipose Nuclei	Adipose
18	chr11:16848000-16863000	Weak transcription	Lung	lung
19	chr11:16848200-16861200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr11:16848200-16861400	Weak transcription	Ovary	ovary
21	chr11:16848200-16862400	Weak transcription	Esophagus	oesophagus
22	chr11:16848200-16863000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:16848200-16871400	Weak transcription	Aorta	Aorta
24	chr11:16848200-16875200	Weak transcription	Right Ventricle	heart
25	chr11:16848400-16866600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:16848400-16878600	Weak transcription	Small Intestine	intestine
27	chr11:16848600-16868400	Weak transcription	HSMMtube	muscle
28	chr11:16849200-16861600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:16849800-16861200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr11:16849800-16865400	Strong transcription	Fetal Intestine Small	intestine
31	chr11:16849800-16871400	Weak transcription	Pancreas	Pancrea
32	chr11:16850400-16871200	Weak transcription	Fetal Brain Female	brain
33	chr11:16850600-16865600	Weak transcription	Psoas Muscle	Psoas
34	chr11:16850600-16871800	Weak transcription	Colonic Mucosa	Colon
35	chr11:16850800-16870600	Weak transcription	Fetal Brain Male	brain
36	chr11:16853400-16883800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr11:16854000-16868000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:16855000-16861200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:16855000-16863400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:16855200-16861400	Weak transcription	Placenta	Placenta
41	chr11:16855200-16862600	Weak transcription	Left Ventricle	heart
42	chr11:16855200-16863600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:16855200-16873000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:16855200-16877600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:16855200-16878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr11:16855400-16861400	Weak transcription	Fetal Stomach	stomach
47	chr11:16855400-16862600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr11:16856200-16863200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:16856400-16861400	Weak transcription	HepG2	liver
50	chr11:16857200-16861400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links