Variant report

Variant	rs415300
Chromosome Location	chr11:16889745-16889746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16885665..16888585-chr11:16888891..16892967,5	MCF-7	breast:
2	chr11:16888585..16890832-chr11:16900532..16902308,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10766354	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10766355	0.92[ASN][1000 genomes]
rs10766356	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10832695	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11024074	0.85[JPT][hapmap]
rs11829035	0.88[JPT][hapmap]
rs177542	0.89[ASN][1000 genomes]
rs177543	0.90[ASN][1000 genomes]
rs2041236	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2215085	0.81[CHD][hapmap]
rs365215	0.87[ASN][1000 genomes]
rs370161	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs373789	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs378755	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs379765	0.94[ASN][1000 genomes]
rs382734	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs384735	0.94[ASN][1000 genomes]
rs385228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392500	0.96[ASN][1000 genomes]
rs392509	0.96[ASN][1000 genomes]
rs402973	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs416258	0.89[JPT][hapmap]
rs426144	0.94[ASN][1000 genomes]
rs428120	0.86[ASN][1000 genomes]
rs432373	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs433660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs439036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs442389	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs450954	0.96[ASN][1000 genomes]
rs4757446	0.81[CHD][hapmap]
rs55646909	0.82[ASN][1000 genomes]
rs7128212	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16863800-16892600	Weak transcription	Fetal Kidney	kidney
2	chr11:16872000-16895800	Weak transcription	Aorta	Aorta
3	chr11:16876600-16889800	Weak transcription	Adipose Nuclei	Adipose
4	chr11:16876600-16890800	Weak transcription	Colonic Mucosa	Colon
5	chr11:16876800-16898600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:16877800-16890000	Weak transcription	Lung	lung
7	chr11:16877800-16892200	Weak transcription	Fetal Stomach	stomach
8	chr11:16877800-16899600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:16878800-16890000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:16882400-16894800	Weak transcription	Pancreas	Pancrea
11	chr11:16882400-16895800	Weak transcription	Gastric	stomach
12	chr11:16882600-16898400	Weak transcription	Ovary	ovary
13	chr11:16884600-16897600	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:16884800-16897600	Weak transcription	Brain Anterior Caudate	brain
15	chr11:16884800-16900000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:16885000-16891600	Weak transcription	HSMM	muscle
17	chr11:16885000-16900200	Weak transcription	Stomach Mucosa	stomach
18	chr11:16885200-16891800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:16885200-16892400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:16885200-16894000	Weak transcription	Left Ventricle	heart
21	chr11:16885200-16894800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:16885200-16894800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:16885200-16902400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:16885400-16889800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:16885400-16889800	Weak transcription	Placenta	Placenta
26	chr11:16885400-16894800	Weak transcription	Right Ventricle	heart
27	chr11:16885400-16900800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:16885600-16890000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:16885800-16890000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:16885800-16891600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr11:16885800-16892000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:16885800-16892800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:16886200-16891400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:16886800-16893000	Strong transcription	Fetal Intestine Small	intestine
35	chr11:16887200-16890000	Weak transcription	Esophagus	oesophagus
36	chr11:16887600-16892200	Strong transcription	Duodenum Mucosa	Duodenum
37	chr11:16888400-16891000	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:16888800-16892200	Strong transcription	Liver	Liver
39	chr11:16888800-16892800	Genic enhancers	Fetal Heart	heart
40	chr11:16889000-16889800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:16889200-16890000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:16889200-16891800	Strong transcription	HepG2	liver
43	chr11:16889200-16892600	Weak transcription	HMEC	breast
44	chr11:16889400-16891000	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr11:16889600-16890200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr11:16889600-16890400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:16889600-16891000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:16889600-16891800	Strong transcription	Fetal Intestine Large	intestine

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