Variant report

Variant	rs415464
Chromosome Location	chr13:64649987-64649988
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs183864	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs198980	0.85[AMR][1000 genomes]
rs269556	0.81[AFR][1000 genomes]
rs269559	0.81[AFR][1000 genomes]
rs269561	0.81[AFR][1000 genomes]
rs269562	0.81[AFR][1000 genomes]
rs269566	0.85[AMR][1000 genomes]
rs269567	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269570	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269571	0.85[AMR][1000 genomes]
rs269573	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269576	0.85[AMR][1000 genomes]
rs269577	0.85[AMR][1000 genomes]
rs269579	0.90[AFR][1000 genomes]
rs269613	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269615	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269616	0.85[AMR][1000 genomes]
rs269617	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269620	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269622	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269623	0.85[AMR][1000 genomes]
rs269624	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269625	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269628	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269642	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269644	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269645	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs272280	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs272346	0.81[AFR][1000 genomes]
rs272361	0.81[AFR][1000 genomes]
rs374928	0.81[AFR][1000 genomes]
rs377326	0.85[AMR][1000 genomes]
rs391161	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs396677	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs399392	0.81[AFR][1000 genomes]
rs416898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs428277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs434464	0.81[AFR][1000 genomes]
rs450390	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900332	chr13:64411616-64856866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv561964	chr13:64412839-64967458	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1044946	chr13:64419179-64937470	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1038291	chr13:64424127-64937470	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047229	chr13:64424127-64962138	Enhancers Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1037078	chr13:64424251-64937470	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1036164	chr13:64425528-64933932	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv516171	chr13:64432922-64936243	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1041541	chr13:64446654-64913526	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv541807	chr13:64446654-64913526	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv994983	chr13:64446655-64913525	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv916348	chr13:64446759-64913520	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv455915	chr13:64455165-64933618	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv561966	chr13:64455165-64933618	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	esv2763030	chr13:64545539-64719372	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv832634	chr13:64583792-64737416	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv430577	chr13:64602899-65034099	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	esv2754234	chr13:64637596-64901664	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
21	nsv561967	chr13:64637651-64751527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
22	esv2754533	chr13:64641096-64655359	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
23	nsv900337	chr13:64643485-64856866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:64646200-64651400	Active TSS	K562	blood
2	chr13:64648200-64654200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:64648600-64651600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:64649000-64650200	Bivalent/Poised TSS	HepG2	liver
5	chr13:64649000-64650600	Active TSS	Hela-S3	cervix
6	chr13:64649200-64650200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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