Variant report

Variant	rs416258
Chromosome Location	chr11:16911636-16911637
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16910866..16914588-chr11:16915188..16918653,3	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10741716	0.85[JPT][hapmap]
rs10766354	0.90[JPT][hapmap];0.83[AFR][1000 genomes]
rs10766356	0.90[JPT][hapmap]
rs10832695	0.90[JPT][hapmap]
rs11024074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11829035	0.89[JPT][hapmap]
rs12418111	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs16933675	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs2041236	0.89[JPT][hapmap]
rs2215085	0.83[JPT][hapmap]
rs366590	0.80[CEU][hapmap]
rs367373	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs370161	0.89[JPT][hapmap]
rs378755	0.89[JPT][hapmap]
rs381815	0.91[CEU][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs382734	0.89[JPT][hapmap]
rs388968	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs393633	0.84[JPT][hapmap]
rs397373	0.83[JPT][hapmap]
rs402973	0.89[JPT][hapmap]
rs407354	0.84[JPT][hapmap]
rs413858	0.80[ASN][1000 genomes]
rs414219	0.84[JPT][hapmap]
rs414992	0.85[JPT][hapmap]
rs415300	0.89[JPT][hapmap]
rs422272	0.80[ASN][1000 genomes]
rs425325	0.84[JPT][hapmap]
rs426570	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs428840	0.84[JPT][hapmap]
rs432046	0.84[JPT][hapmap]
rs432373	0.90[JPT][hapmap]
rs434176	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs434899	0.83[JPT][hapmap]
rs435206	0.88[JPT][hapmap]
rs442389	0.89[JPT][hapmap]
rs445205	0.84[JPT][hapmap]
rs446518	0.84[JPT][hapmap]
rs448671	0.90[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs4756878	0.83[JPT][hapmap]
rs4757444	0.83[JPT][hapmap]
rs4757446	0.83[JPT][hapmap]
rs58542530	0.82[ASN][1000 genomes]
rs61882035	0.82[ASN][1000 genomes]
rs61882036	0.82[ASN][1000 genomes]
rs61882037	0.82[ASN][1000 genomes]
rs61882038	0.80[ASN][1000 genomes]
rs7117745	0.85[JPT][hapmap]
rs7121911	0.83[JPT][hapmap]
rs7926335	0.91[CEU][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7931794	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv825770	chr11:16908083-16912537	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16903600-16914400	Weak transcription	Right Atrium	heart
2	chr11:16905200-16913600	Weak transcription	Gastric	stomach
3	chr11:16905200-16913600	Weak transcription	Pancreas	Pancrea
4	chr11:16910000-16913600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:16910000-16917800	Weak transcription	Lung	lung
6	chr11:16911200-16912200	ZNF genes & repeats	A549	lung
7	chr11:16911200-16916000	Enhancers	Stomach Mucosa	stomach
8	chr11:16911400-16912000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:16911600-16912200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:16911600-16913000	Enhancers	Fetal Heart	heart
11	chr11:16911600-16914800	Weak transcription	Fetal Intestine Small	intestine

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