Variant report

Variant	rs417013
Chromosome Location	chr7:101820155-101820156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101818168..101820357-chr7:101820533..101822858,2	K562	blood:
2	chr21:34914708..34916793-chr7:101819410..101821719,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159140	Chromatin interaction
ENSG00000159131	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1297621	0.81[EUR][1000 genomes]
rs169307	0.81[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1902	0.85[JPT][hapmap]
rs201435	0.81[CEU][hapmap]
rs201441	0.81[CEU][hapmap];0.87[LWK][hapmap]
rs201442	0.81[CEU][hapmap];0.87[LWK][hapmap]
rs201443	0.81[CEU][hapmap]
rs201445	0.84[CEU][hapmap]
rs201447	0.88[CEU][hapmap]
rs201448	0.81[CEU][hapmap];0.84[LWK][hapmap];0.82[MKK][hapmap]
rs201449	0.81[CEU][hapmap];0.87[LWK][hapmap]
rs201450	0.81[CEU][hapmap];0.87[LWK][hapmap]
rs201454	0.81[CEU][hapmap]
rs201455	0.81[CEU][hapmap];0.84[LWK][hapmap]
rs201456	0.81[CEU][hapmap]
rs201468	0.81[CEU][hapmap]
rs201469	0.81[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs201470	0.82[EUR][1000 genomes]
rs201471	0.83[EUR][1000 genomes]
rs201472	0.83[EUR][1000 genomes]
rs201475	0.81[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs201477	0.80[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs201478	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs201480	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs201481	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs201482	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs201485	0.81[EUR][1000 genomes]
rs201486	0.80[EUR][1000 genomes]
rs201489	0.82[EUR][1000 genomes]
rs201490	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs201492	0.83[EUR][1000 genomes]
rs201493	0.82[EUR][1000 genomes]
rs201497	0.84[EUR][1000 genomes]
rs201498	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs201500	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs201502	0.81[CEU][hapmap];0.85[JPT][hapmap];0.90[LWK][hapmap];0.91[MEX][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs201503	0.81[CEU][hapmap];0.90[LWK][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs201504	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs201505	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs201507	0.85[EUR][1000 genomes]
rs201508	0.85[EUR][1000 genomes]
rs201509	0.85[EUR][1000 genomes]
rs201511	0.83[EUR][1000 genomes]
rs201522	0.81[CEU][hapmap];0.85[JPT][hapmap];0.81[LWK][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs201526	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs201527	0.80[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs201529	0.85[EUR][1000 genomes]
rs2529095	0.82[EUR][1000 genomes]
rs2734782	0.81[EUR][1000 genomes]
rs367333	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs380175	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs382228	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs411354	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs427534	0.85[EUR][1000 genomes]
rs436287	0.88[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs436709	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs443963	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs448591	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4729776	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6465851	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6950791	0.81[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6970800	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs417013	EPHB4	cis	parietal	SCAN
rs417013	ZCWPW1	cis	cerebellum	SCAN
rs417013	CUX1	cis	cerebellum	SCAN

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101784800-101821600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr7:101784800-101822600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr7:101797200-101821400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:101797200-101827800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:101797200-101832000	Weak transcription	Fetal Heart	heart
6	chr7:101797800-101852200	Weak transcription	NHEK	skin
7	chr7:101800400-101850000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr7:101800600-101851800	Strong transcription	Fetal Intestine Small	intestine
9	chr7:101801200-101864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:101805400-101862200	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:101807400-101821400	Weak transcription	Aorta	Aorta
12	chr7:101808000-101820800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:101808200-101821400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr7:101808200-101824200	Strong transcription	Dnd41	blood
15	chr7:101808200-101840200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:101808400-101868400	Strong transcription	Thymus	Thymus
17	chr7:101810000-101821600	Weak transcription	Esophagus	oesophagus
18	chr7:101810400-101820800	Weak transcription	Right Ventricle	heart
19	chr7:101812400-101822600	Weak transcription	Small Intestine	intestine
20	chr7:101812400-101860800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:101812600-101863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:101812600-101867000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr7:101812600-101867000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr7:101813200-101823600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:101813200-101852000	Weak transcription	NHDF-Ad	bronchial
26	chr7:101813400-101832000	Strong transcription	Fetal Stomach	stomach
27	chr7:101813600-101821600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr7:101813600-101832200	Weak transcription	NHLF	lung
29	chr7:101813800-101821000	Weak transcription	A549	lung
30	chr7:101813800-101822600	Weak transcription	Fetal Kidney	kidney
31	chr7:101813800-101860800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:101814000-101829000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:101814000-101837000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr7:101814000-101863600	Weak transcription	HUVEC	blood vessel
35	chr7:101814200-101821400	Weak transcription	Ovary	ovary
36	chr7:101814200-101821600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr7:101814200-101830000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:101814200-101858600	Weak transcription	Right Atrium	heart
39	chr7:101814400-101820800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr7:101814400-101840200	Weak transcription	NH-A	brain
41	chr7:101814600-101821800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr7:101814600-101828000	Weak transcription	Osteobl	bone
43	chr7:101814600-101829000	Weak transcription	HSMMtube	muscle
44	chr7:101814600-101837200	Weak transcription	HSMM	muscle
45	chr7:101814600-101840200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr7:101815200-101821400	Weak transcription	HepG2	liver
47	chr7:101815400-101821800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr7:101815600-101820800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr7:101815800-101820800	Weak transcription	Fetal Lung	lung
50	chr7:101815800-101821400	Weak transcription	H9 Cell Line	embryonic stem cell

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