Variant report

Variant	rs420709
Chromosome Location	chr7:101705521-101705522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101705153..101708097-chr7:101711212..101713863,3	K562	blood:
2	chr7:101462493..101465700-chr7:101703860..101705566,3	MCF-7	breast:
3	chr7:101704873..101706493-chr7:101731658..101734496,2	K562	blood:
4	chr7:101698449..101701130-chr7:101703905..101706013,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10268506	1.00[CHB][hapmap]
rs365397	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs366345	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs367773	1.00[ASN][1000 genomes]
rs370760	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs372321	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs372711	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs372989	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs373682	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs375417	0.94[CEU][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs377587	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs377612	1.00[ASN][1000 genomes]
rs379347	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs380934	1.00[ASN][1000 genomes]
rs381145	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs384436	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs393074	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs402294	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs403883	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs404523	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs405073	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs405141	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs406012	0.83[ASN][1000 genomes]
rs411844	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs412332	1.00[ASN][1000 genomes]
rs412524	1.00[ASN][1000 genomes]
rs413348	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs421154	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs421430	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs425577	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs4294126	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs430154	1.00[ASN][1000 genomes]
rs431821	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs432002	1.00[ASN][1000 genomes]
rs432600	1.00[ASN][1000 genomes]
rs438908	1.00[ASN][1000 genomes]
rs441160	1.00[ASN][1000 genomes]
rs443159	1.00[ASN][1000 genomes]
rs443293	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4729771	1.00[ASN][1000 genomes]
rs73185898	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv482521	chr7:101604002-101718950	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831080	chr7:101629121-101718950	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1027574	chr7:101654060-101718950	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv607985	chr7:101683563-101718950	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101668000-101707200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr7:101674200-101707400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:101688400-101706400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:101688600-101707200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:101689400-101706400	Weak transcription	Stomach Mucosa	stomach
6	chr7:101689400-101714600	Weak transcription	HSMMtube	muscle
7	chr7:101689800-101714800	Weak transcription	NHLF	lung
8	chr7:101690600-101713800	Weak transcription	Fetal Lung	lung
9	chr7:101690600-101713800	Weak transcription	Ovary	ovary
10	chr7:101694400-101707200	Weak transcription	Right Atrium	heart
11	chr7:101694800-101707000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:101695000-101706400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:101695000-101706400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:101696800-101706400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:101697400-101706400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr7:101697600-101711800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr7:101697800-101709800	Weak transcription	Thymus	Thymus
18	chr7:101697800-101711800	Weak transcription	HepG2	liver
19	chr7:101698000-101712000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr7:101699800-101712000	Weak transcription	Primary T cells from cord blood	blood
21	chr7:101700000-101707200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:101700000-101713800	Weak transcription	Aorta	Aorta
23	chr7:101700200-101707000	Weak transcription	Fetal Intestine Large	intestine
24	chr7:101703000-101706200	Weak transcription	Fetal Stomach	stomach
25	chr7:101703800-101707200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:101703800-101713400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr7:101704200-101712000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr7:101704400-101706600	Strong transcription	Fetal Intestine Small	intestine
29	chr7:101704600-101705600	Enhancers	Spleen	Spleen
30	chr7:101704600-101705800	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr7:101704600-101705800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:101704600-101706000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:101704600-101706000	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr7:101704600-101706000	Enhancers	Primary B cells from peripheral blood	blood
35	chr7:101704600-101706000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:101704600-101706000	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr7:101704800-101705600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr7:101704800-101705600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:101704800-101705600	Enhancers	Right Ventricle	heart
40	chr7:101704800-101705800	Flanking Active TSS	GM12878-XiMat	blood
41	chr7:101704800-101705800	Enhancers	K562	blood
42	chr7:101704800-101706000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:101704800-101706800	Enhancers	Hela-S3	cervix
44	chr7:101704800-101707800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr7:101704800-101708800	Enhancers	Placenta	Placenta
46	chr7:101705000-101705600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr7:101705000-101705800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:101705000-101705800	Enhancers	Placenta Amnion	Placenta Amnion
49	chr7:101705000-101706000	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr7:101705200-101705600	Enhancers	HUES6 Cell Line	embryonic stem cell

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