Variant report

Variant	rs420920
Chromosome Location	chr7:101859159-101859160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1108056	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11540899	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12537077	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs372968	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs375445	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs382947	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs385417	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs407943	0.91[ASN][1000 genomes]
rs408425	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs409224	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs410697	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41275218	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs423452	0.81[ASN][1000 genomes]
rs434624	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs437060	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs448775	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56077916	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56235745	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60987662	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67531258	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6976947	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101801200-101864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:101805400-101862200	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:101808400-101868400	Strong transcription	Thymus	Thymus
4	chr7:101812400-101860800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:101812600-101863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:101812600-101867000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr7:101812600-101867000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:101813800-101860800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:101814000-101863600	Weak transcription	HUVEC	blood vessel
10	chr7:101816000-101859800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:101820600-101860200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:101824400-101863400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:101829400-101870800	Weak transcription	Small Intestine	intestine
14	chr7:101832200-101859200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:101832200-101859400	Strong transcription	Fetal Thymus	thymus
16	chr7:101832200-101863200	Strong transcription	Dnd41	blood
17	chr7:101832400-101864000	Strong transcription	Fetal Stomach	stomach
18	chr7:101832600-101860200	Strong transcription	Duodenum Mucosa	Duodenum
19	chr7:101832800-101864800	Strong transcription	Primary T cells from cord blood	blood
20	chr7:101834600-101860200	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:101837400-101861600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:101838400-101889400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:101840600-101863800	Weak transcription	NH-A	brain
24	chr7:101841200-101863800	Weak transcription	HSMM	muscle
25	chr7:101846000-101904200	Weak transcription	Stomach Mucosa	stomach
26	chr7:101847000-101877200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr7:101848800-101872000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr7:101849000-101863600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr7:101849200-101864400	Weak transcription	NHLF	lung
30	chr7:101849200-101870400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr7:101849400-101870600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr7:101849600-101870600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:101849600-101875600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr7:101849800-101859400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr7:101849800-101863800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:101849800-101871400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr7:101849800-101877400	Weak transcription	Hela-S3	cervix
38	chr7:101850400-101859800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr7:101850600-101859800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr7:101850600-101863800	Weak transcription	HSMMtube	muscle
41	chr7:101851600-101860200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr7:101852200-101870400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr7:101852400-101893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:101852600-101870600	Weak transcription	Aorta	Aorta
45	chr7:101852600-101872000	Weak transcription	Brain Anterior Caudate	brain
46	chr7:101852800-101860600	Weak transcription	Colonic Mucosa	Colon
47	chr7:101852800-101870600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr7:101852800-101897000	Weak transcription	NHEK	skin
49	chr7:101853800-101859800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr7:101853800-101860000	Strong transcription	Spleen	Spleen

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