Variant report

Variant	rs4235682
Chromosome Location	chr5:74251391-74251392
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10045282	0.83[ASN][1000 genomes]
rs10066902	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078075	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10805892	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10942726	0.85[ASN][1000 genomes]
rs11748722	0.82[ASN][1000 genomes]
rs12515649	0.82[ASN][1000 genomes]
rs3934476	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4368710	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4382144	0.82[ASN][1000 genomes]
rs4392602	0.90[ASN][1000 genomes]
rs4413513	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703642	0.91[ASN][1000 genomes]
rs6453099	0.91[ASN][1000 genomes]
rs6453100	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6453102	0.89[EUR][1000 genomes]
rs6863602	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867482	0.80[ASN][1000 genomes]
rs6883719	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898812	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736223	0.91[ASN][1000 genomes]
rs9293637	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74244200-74253400	Weak transcription	Aorta	Aorta
2	chr5:74244600-74251600	Enhancers	NHLF	lung
3	chr5:74245400-74256000	Enhancers	Fetal Intestine Large	intestine
4	chr5:74245800-74255800	Enhancers	Stomach Mucosa	stomach
5	chr5:74246200-74251600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:74246200-74259200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:74246400-74252000	Enhancers	NHDF-Ad	bronchial
8	chr5:74246600-74255000	Enhancers	HepG2	liver
9	chr5:74246600-74256600	Enhancers	Fetal Intestine Small	intestine
10	chr5:74247000-74253000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:74247800-74253400	Enhancers	NHEK	skin
12	chr5:74248000-74253000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:74248400-74253600	Enhancers	Placenta	Placenta
14	chr5:74249200-74253400	Enhancers	HMEC	breast
15	chr5:74249400-74251800	Enhancers	NH-A	brain
16	chr5:74249400-74252400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:74249400-74253600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:74249600-74251400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:74249600-74251400	Enhancers	Hela-S3	cervix
20	chr5:74249600-74251400	Enhancers	Osteobl	bone
21	chr5:74249600-74254400	Enhancers	Duodenum Mucosa	Duodenum
22	chr5:74250000-74254000	Weak transcription	Small Intestine	intestine
23	chr5:74250200-74252000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr5:74250400-74252000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr5:74250400-74252000	Weak transcription	Gastric	stomach
26	chr5:74250800-74251400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr5:74250800-74251800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:74250800-74251800	Weak transcription	Pancreas	Pancrea
29	chr5:74250800-74252000	Weak transcription	Fetal Kidney	kidney
30	chr5:74250800-74252800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr5:74250800-74253200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr5:74251200-74252600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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