Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13000472..13003227-chr6:13006605..13008195,2	K562	blood:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11758659	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11961007	0.87[ASN][1000 genomes]
rs11963982	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13207062	0.87[ASN][1000 genomes]
rs34576660	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4132046	0.82[EUR][1000 genomes]
rs4349811	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4492189	0.81[EUR][1000 genomes]
rs4711899	0.85[ASN][1000 genomes]
rs4715043	0.87[ASN][1000 genomes]
rs4715048	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6900619	0.83[ASN][1000 genomes]
rs6901563	0.83[ASN][1000 genomes]
rs6916268	0.83[ASN][1000 genomes]
rs6920970	0.83[ASN][1000 genomes]
rs6924689	0.81[EUR][1000 genomes]
rs7341250	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7743219	0.87[ASN][1000 genomes]
rs9296580	0.87[ASN][1000 genomes]
rs9369759	0.82[EUR][1000 genomes]
rs9369760	0.81[EUR][1000 genomes]
rs9381636	0.81[EUR][1000 genomes]
rs9395335	0.82[EUR][1000 genomes]
rs9463363	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9463364	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9473156	0.83[ASN][1000 genomes]
rs9473188	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9473198	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12997400-13011000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:13004400-13010200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:13005200-13008200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:13006200-13013200	Enhancers	Brain Anterior Caudate	brain
5	chr6:13006400-13007800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:13006400-13008400	Weak transcription	Aorta	Aorta
7	chr6:13006400-13009400	Enhancers	Fetal Heart	heart
8	chr6:13006400-13010000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:13006800-13007800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:13006800-13007800	Enhancers	K562	blood
11	chr6:13007000-13009400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:13007200-13007800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:13007200-13008400	Weak transcription	Brain Angular Gyrus	brain
14	chr6:13007200-13012200	Weak transcription	Right Ventricle	heart
15	chr6:13007400-13007800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:13007400-13007800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:13007400-13009200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:13007400-13011000	Weak transcription	Left Ventricle	heart
19	chr6:13007600-13007800	Enhancers	Brain Cingulate Gyrus	brain

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