Variant report

Variant	rs4237019
Chromosome Location	chr8:58663251-58663252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4237018	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301443	0.85[CEU][hapmap];0.82[JPT][hapmap];0.85[LWK][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4559230	0.80[CEU][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4560771	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4738615	0.83[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4738616	0.85[CEU][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4738617	0.88[CHB][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890937	chr8:58600994-58695807	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58661400-58663800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:58661600-58663400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:58661600-58665600	Weak transcription	Fetal Lung	lung
4	chr8:58661800-58663400	Weak transcription	Fetal Brain Female	brain
5	chr8:58661800-58663400	Weak transcription	Right Atrium	heart
6	chr8:58662800-58663400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:58662800-58664000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:58662800-58664200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:58663000-58663600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:58663000-58663800	Flanking Active TSS	Osteobl	bone
11	chr8:58663000-58664000	Enhancers	Fetal Muscle Leg	muscle
12	chr8:58663000-58664000	Enhancers	HSMMtube	muscle
13	chr8:58663000-58664800	Enhancers	NHDF-Ad	bronchial
14	chr8:58663200-58663400	Enhancers	Fetal Stomach	stomach
15	chr8:58663200-58663600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr8:58663200-58663600	Enhancers	Colon Smooth Muscle	Colon
17	chr8:58663200-58663800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:58663200-58664000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:58663200-58664000	Enhancers	Fetal Brain Male	brain
20	chr8:58663200-58664000	Enhancers	HepG2	liver
21	chr8:58663200-58664000	Enhancers	HSMM	muscle
22	chr8:58663200-58664400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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