Variant report

Variant	rs4237716
Chromosome Location	chr11:17009826-17009827
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:16981332..16983715-chr11:17008993..17011024,2	MCF-7	breast:
2	chr11:17008798..17010671-chr11:17099542..17102207,2	MCF-7	breast:
3	chr11:16996304..16999163-chr11:17008949..17011648,2	MCF-7	breast:
4	chr11:17009264..17011620-chr11:17027061..17029636,2	MCF-7	breast:
5	chr11:17006921..17009898-chr11:17019659..17022087,3	MCF-7	breast:
6	chr11:17004144..17005868-chr11:17008994..17011886,3	MCF-7	breast:
7	chr11:17009150..17011174-chr11:17092627..17094497,2	MCF-7	breast:
8	chr11:16976889..16978865-chr11:17008807..17011495,3	MCF-7	breast:
9	chr11:17001912..17011357-chr11:17032509..17037700,15	MCF-7	breast:
10	chr11:17008749..17010885-chr11:17026366..17028840,2	MCF-7	breast:
11	chr11:17007115..17010774-chr11:17033404..17036243,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000266493	Chromatin interaction
ENSG00000184669	Chromatin interaction
ENSG00000244398	Chromatin interaction
ENSG00000166689	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10734250	1.00[YRI][hapmap]
rs10766366	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766367	0.91[EUR][1000 genomes]
rs10766370	0.90[YRI][hapmap]
rs10832707	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs10832709	0.96[CEU][hapmap];0.80[YRI][hapmap];0.91[EUR][1000 genomes]
rs10832710	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10832712	0.91[EUR][1000 genomes]
rs10832713	0.80[YRI][hapmap]
rs10832721	0.89[YRI][hapmap]
rs11529141	0.94[AFR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1468489	0.80[YRI][hapmap]
rs2302207	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2353369	0.96[CEU][hapmap];0.80[YRI][hapmap];0.91[EUR][1000 genomes]
rs4237715	0.91[EUR][1000 genomes]
rs4351794	0.89[YRI][hapmap]
rs4468326	0.86[JPT][hapmap]
rs4469869	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757468	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4757470	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4757472	0.92[EUR][1000 genomes]
rs4757473	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4757474	0.91[EUR][1000 genomes]
rs4757475	0.91[EUR][1000 genomes]
rs4757476	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4757484	0.80[YRI][hapmap]
rs4757490	0.89[YRI][hapmap]
rs6486333	0.91[EUR][1000 genomes]
rs6486334	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs6486335	0.80[YRI][hapmap]
rs7118307	0.91[EUR][1000 genomes]
rs7122802	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7130826	0.86[JPT][hapmap]
rs7924495	0.86[JPT][hapmap]
rs7934567	0.92[AFR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7940499	0.80[YRI][hapmap]
rs7944490	0.92[AFR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv983149	chr11:17003386-17011615	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16998000-17011800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:17000600-17011800	Enhancers	Pancreas	Pancrea
3	chr11:17001400-17010600	Enhancers	Placenta	Placenta
4	chr11:17004200-17011200	Weak transcription	Brain Germinal Matrix	brain
5	chr11:17004800-17034200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:17005800-17012200	Enhancers	Gastric	stomach
7	chr11:17006000-17010000	Enhancers	Fetal Heart	heart
8	chr11:17006200-17013200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:17006400-17013400	Weak transcription	Fetal Stomach	stomach
10	chr11:17006400-17034000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:17006600-17010000	Enhancers	Liver	Liver
12	chr11:17007000-17010000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:17007000-17010000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:17007000-17010000	Enhancers	Fetal Kidney	kidney
15	chr11:17007000-17014200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr11:17008200-17014600	Weak transcription	Fetal Lung	lung
17	chr11:17008400-17016000	Weak transcription	Thymus	Thymus
18	chr11:17009000-17010000	Flanking Active TSS	Stomach Mucosa	stomach
19	chr11:17009200-17010000	Enhancers	Colonic Mucosa	Colon
20	chr11:17009200-17011000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:17009200-17015000	Weak transcription	Adipose Nuclei	Adipose
22	chr11:17009400-17010000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr11:17009400-17010600	Weak transcription	GM12878-XiMat	blood
24	chr11:17009400-17011000	Weak transcription	Right Ventricle	heart
25	chr11:17009400-17012400	Genic enhancers	Fetal Intestine Small	intestine
26	chr11:17009400-17013200	Weak transcription	Right Atrium	heart
27	chr11:17009400-17014600	Weak transcription	Small Intestine	intestine
28	chr11:17009400-17015800	Weak transcription	Left Ventricle	heart
29	chr11:17009400-17032600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:17009600-17010000	Enhancers	Lung	lung
31	chr11:17009600-17010400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:17009600-17010600	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr11:17009600-17011400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:17009600-17012200	Weak transcription	HepG2	liver
35	chr11:17009600-17017600	Weak transcription	Ovary	ovary
36	chr11:17009800-17010000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:17009800-17010600	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr11:17009800-17011000	Weak transcription	Brain Substantia Nigra	brain
39	chr11:17009800-17011200	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:17009800-17011600	Genic enhancers	Fetal Intestine Large	intestine
41	chr11:17009800-17011800	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr11:17009800-17012000	Enhancers	Duodenum Mucosa	Duodenum
43	chr11:17009800-17013200	Weak transcription	Esophagus	oesophagus
44	chr11:17009800-17013400	Weak transcription	Brain Anterior Caudate	brain
45	chr11:17009800-17018000	Weak transcription	Spleen	Spleen
46	chr11:17009800-17018800	Weak transcription	A549	lung
47	chr11:17009800-17030000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr11:17009800-17032600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr11:17009800-17032600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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