Variant report

Variant	rs42390
Chromosome Location	chr5:151450294-151450295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:151443903..151445789-chr5:151450245..151452999,2	K562	blood:
2	chr5:151448044..151450792-chr5:151450881..151452825,2	MCF-7	breast:
3	chr5:151443718..151445789-chr5:151449556..151451745,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs153537	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs153538	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs154097	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154099	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs154106	0.83[EUR][1000 genomes]
rs154107	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs154695	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs154696	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs154700	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs154702	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159494	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159583	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs159589	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs169953	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1896778	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs253725	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs253727	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs253728	0.82[EUR][1000 genomes]
rs253729	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs253730	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2584910	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs29846	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29847	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29850	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs29853	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs388795	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs39580	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs43166	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs518297	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv5071	chr5:151438330-151472013	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv508384	chr5:151438582-151487326	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151446800-151451600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr5:151446800-151452000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:151447000-151451600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:151447000-151452000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:151447000-151452000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:151447400-151451600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:151450200-151452000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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