Variant report

Variant	rs4240963
Chromosome Location	chr1:93459806-93459807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93458427..93460268-chr1:93644070..93646479,2	K562	blood:
2	chr1:93321818..93322319-chr1:93459387..93460072,2	K562	blood:
3	chr1:93458381..93461372-chr1:93479810..93482559,2	MCF-7	breast:
4	chr1:93452194..93457760-chr1:93458258..93461631,4	K562	blood:
5	chr1:93427351..93429788-chr1:93458702..93460989,2	MCF-7	breast:
6	chr1:93433886..93434653-chr1:93459417..93459972,3	MCF-7	breast:
7	chr1:93367819..93368523-chr1:93459419..93460269,3	MCF-7	breast:
8	chr1:93431361..93434358-chr1:93458613..93460256,2	K562	blood:
9	chr1:93433855..93434644-chr1:93459477..93460861,4	MCF-7	breast:
10	chr1:93323949..93325580-chr1:93458442..93460738,42	K562	blood:
11	chr1:93434107..93434686-chr1:93459416..93460145,4	K562	blood:
12	chr1:93324129..93325092-chr1:93459202..93460677,9	MCF-7	breast:
13	chr1:93459371..93463416-chr1:93464297..93466371,4	K562	blood:
14	chr1:93250962..93252670-chr1:93458393..93461376,2	K562	blood:
15	chr1:93324140..93325063-chr1:93459344..93460476,14	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10465757	0.89[EUR][1000 genomes]
rs2785608	1.00[EUR][1000 genomes]
rs4130290	1.00[EUR][1000 genomes]
rs4264009	1.00[EUR][1000 genomes]
rs4442373	1.00[EUR][1000 genomes]
rs4847388	1.00[EUR][1000 genomes]
rs501894	1.00[EUR][1000 genomes]
rs56185219	0.89[EUR][1000 genomes]
rs652456	1.00[EUR][1000 genomes]
rs6669107	1.00[EUR][1000 genomes]
rs74101354	1.00[EUR][1000 genomes]
rs74101356	1.00[EUR][1000 genomes]
rs74101362	1.00[EUR][1000 genomes]
rs74101363	0.89[EUR][1000 genomes]
rs7535486	1.00[EUR][1000 genomes]
rs7548287	0.89[EUR][1000 genomes]
rs9439942	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93451800-93466000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:93456000-93461000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:93456200-93461200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:93459200-93460000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:93459200-93462000	Enhancers	Fetal Intestine Large	intestine
6	chr1:93459200-93462200	Enhancers	Fetal Intestine Small	intestine
7	chr1:93459600-93461000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr1:93459600-93461200	Enhancers	Stomach Mucosa	stomach
9	chr1:93459800-93460800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr1:93459800-93460800	Weak transcription	HepG2	liver
11	chr1:93459800-93466000	Weak transcription	Brain Anterior Caudate	brain
12	chr1:93459800-93466000	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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