Variant report

Variant	rs4245009
Chromosome Location	chr10:52577815-52577816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10761546	0.85[ASN][1000 genomes]
rs10761548	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821678	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap]
rs10821698	0.84[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs10821825	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821846	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821854	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821859	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994196	0.88[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10994489	0.87[ASN][1000 genomes]
rs10994492	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10994504	0.87[ASN][1000 genomes]
rs12358745	0.87[ASN][1000 genomes]
rs16751	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3802531	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4268458	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4531415	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4550168	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4617537	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4935006	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4935007	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4935178	0.88[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs4935191	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4935192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61858572	0.82[ASN][1000 genomes]
rs6479701	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs7068127	0.91[JPT][hapmap]
rs7074369	0.80[EUR][1000 genomes]
rs7089428	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7089955	0.80[EUR][1000 genomes]
rs7895606	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7913937	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7917358	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52565800-52592000	Weak transcription	Stomach Mucosa	stomach
2	chr10:52573400-52588200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:52574400-52586600	Strong transcription	Liver	Liver
4	chr10:52574800-52580400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr10:52575400-52580400	Strong transcription	Fetal Intestine Large	intestine
6	chr10:52575400-52580600	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr10:52575400-52585600	Strong transcription	HepG2	liver
8	chr10:52576800-52578600	Weak transcription	Fetal Intestine Small	intestine
9	chr10:52576800-52597200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:52577200-52578600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:52577200-52582400	Weak transcription	Pancreas	Pancrea

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