Variant report

Variant	rs4245149
Chromosome Location	chr11:113338357-113338358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:113338240..113340526-chr11:113343673..113346425,2	K562	blood:
2	chr11:113304576..113307222-chr11:113336806..113338535,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149295	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10789943	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10789944	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10789945	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10891550	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10891551	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10891552	0.98[ASN][1000 genomes]
rs10891556	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10891565	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11214611	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11214618	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11214632	0.87[ASN][1000 genomes]
rs11214633	0.89[ASN][1000 genomes]
rs11214635	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12421616	0.98[ASN][1000 genomes]
rs2002228	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2002229	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4350392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4447205	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4548655	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4648317	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4938019	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4938026	0.89[ASN][1000 genomes]
rs55887984	0.98[ASN][1000 genomes]
rs7117915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122454	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7479729	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556444	chr11:113234432-113383394	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv898394	chr11:113298339-113341391	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:113328800-113344400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:113335400-113338400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:113337200-113339600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:113337200-113344400	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links