Variant report

Variant	rs4251744
Chromosome Location	chr17:34149502-34149503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34137709..34141485-chr17:34149369..34151902,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10451309	0.80[EUR][1000 genomes]
rs1065341	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963927	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971570	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971585	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971600	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971620	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971624	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28912069	0.82[EUR][1000 genomes]
rs28914812	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28914818	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251704	0.82[EUR][1000 genomes]
rs4251710	0.82[EUR][1000 genomes]
rs4251776	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59536691	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60040900	0.80[EUR][1000 genomes]
rs61590868	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7209512	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224965	0.80[EUR][1000 genomes]
rs8073456	1.00[EUR][1000 genomes]
rs965984	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9674851	0.89[EUR][1000 genomes]
rs9895464	0.89[EUR][1000 genomes]
rs9898128	0.89[EUR][1000 genomes]
rs9901469	0.80[EUR][1000 genomes]
rs9907320	0.80[EUR][1000 genomes]
rs9914929	0.89[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34137800-34149800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr17:34137800-34152000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr17:34137800-34154000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:34138000-34149600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr17:34138000-34153400	Weak transcription	Right Ventricle	heart
6	chr17:34138000-34164200	Weak transcription	Colonic Mucosa	Colon
7	chr17:34138200-34149600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr17:34138200-34151600	Weak transcription	Fetal Heart	heart
9	chr17:34138600-34180800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr17:34138800-34184000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr17:34139200-34184200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr17:34139400-34163800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr17:34139400-34163800	Weak transcription	Spleen	Spleen
14	chr17:34139400-34177600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr17:34140800-34149600	Weak transcription	Fetal Brain Male	brain
16	chr17:34141600-34177400	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr17:34141800-34159800	Weak transcription	Aorta	Aorta
18	chr17:34142000-34175800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr17:34142000-34177600	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr17:34142200-34152600	Strong transcription	Primary B cells from cord blood	blood
21	chr17:34142400-34177600	Strong transcription	Fetal Thymus	thymus
22	chr17:34142400-34178200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr17:34142600-34173200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr17:34142600-34175600	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr17:34142600-34177400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr17:34142600-34180400	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr17:34142800-34149600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr17:34142800-34153400	Strong transcription	Placenta	Placenta
29	chr17:34142800-34173200	Strong transcription	Osteobl	bone
30	chr17:34142800-34178600	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr17:34142800-34180800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr17:34142800-34181000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr17:34143000-34152600	Strong transcription	Hela-S3	cervix
34	chr17:34143000-34174800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr17:34143000-34177400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr17:34143000-34177400	Strong transcription	Primary B cells from peripheral blood	blood
37	chr17:34143200-34166200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr17:34143400-34173200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr17:34143600-34158800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr17:34143600-34168200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr17:34144000-34175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr17:34144000-34180000	Strong transcription	HSMM	muscle
43	chr17:34144200-34149600	Weak transcription	Ovary	ovary
44	chr17:34144200-34153800	Weak transcription	Lung	lung
45	chr17:34144200-34164200	Weak transcription	Pancreas	Pancrea
46	chr17:34144400-34149600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr17:34144400-34153000	Strong transcription	Primary hematopoietic stem cells	blood
48	chr17:34144400-34153800	Strong transcription	HMEC	breast
49	chr17:34144400-34171000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr17:34144600-34156400	Strong transcription	A549	lung

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